Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E08
         (490 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri...   207   4e-54
At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri...   204   2e-53
At4g19870.2 68417.m02913 kelch repeat-containing F-box family pr...    31   0.42 
At4g19870.1 68417.m02912 kelch repeat-containing F-box family pr...    31   0.42 
At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protei...    31   0.55 
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si...    29   2.2  
At3g29060.1 68416.m03635 EXS family protein / ERD1/XPR1/SYG1 fam...    28   2.9  
At4g15880.1 68417.m02413 Ulp1 protease family protein contains P...    27   6.8  
At1g46912.1 68414.m05219 F-box family protein-related contains w...    27   9.0  

>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
           ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
          Length = 197

 Score =  207 bits (505), Expect = 4e-54
 Identities = 99/149 (66%), Positives = 119/149 (79%)
 Frame = +3

Query: 42  MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 221
           MVN R    + KT+  PRRP+EK RLD ELK++GEYGLR KRE+WRV+YTL+RIR AARE
Sbjct: 1   MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARE 60

Query: 222 LLTLEEKDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGL 401
           LLTL+EK+P+R+FEG A           DE Q KLDYVL L +E+FLERRLQT VFK+G+
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGM 120

Query: 402 AKSIHHARILIRQRHIRVRKQVVNIPSFI 488
           AKSIHHAR+LIRQRHIRV +Q+VNIPSF+
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQLVNIPSFM 149


>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
           ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
          Length = 198

 Score =  204 bits (498), Expect = 2e-53
 Identities = 94/140 (67%), Positives = 115/140 (82%)
 Frame = +3

Query: 69  FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 248
           + KT+  PRRP+EK RLD ELK++GEYGLRNKRE+WRV+Y+L+RIR AAR+LLTL+EK P
Sbjct: 10  YGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSP 69

Query: 249 KRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 428
           +R+FEG A           DE Q KLDYVL L +E+FLERRLQT VFK+G+AKSIHH+R+
Sbjct: 70  RRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRV 129

Query: 429 LIRQRHIRVRKQVVNIPSFI 488
           LIRQRHIRV KQ+VNIPSF+
Sbjct: 130 LIRQRHIRVGKQLVNIPSFM 149


>At4g19870.2 68417.m02913 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 400

 Score = 31.1 bits (67), Expect = 0.42
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -2

Query: 360 RSPQSSNRAHNPVSSVSHQALRP*PDDVVEHCLQTIS*DPSPRVSTV 220
           +  + +  A +P  S S  +L   PD++VE+CL  IS    P +S V
Sbjct: 10  KKTKRTTNASSPTPSSSSPSLSSLPDEIVENCLARISRSYYPTLSIV 56


>At4g19870.1 68417.m02912 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 400

 Score = 31.1 bits (67), Expect = 0.42
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -2

Query: 360 RSPQSSNRAHNPVSSVSHQALRP*PDDVVEHCLQTIS*DPSPRVSTV 220
           +  + +  A +P  S S  +L   PD++VE+CL  IS    P +S V
Sbjct: 10  KKTKRTTNASSPTPSSSSPSLSSLPDEIVENCLARISRSYYPTLSIV 56


>At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protein
           40S RIBOSOMAL PROTEINs - different species
          Length = 182

 Score = 30.7 bits (66), Expect = 0.55
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 342 LKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 488
           L +  F  RRL T +     A+    A   I Q H+RV  + +  P+F+
Sbjct: 99  LSVSSFCRRRLSTVLVHLKFAEHHKEAVTYIEQGHVRVGPETITDPAFL 147


>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
           similar to chloroplast membrane protein (ALBINO3)
           (GI:3927828) [Arabidopsis thaliana]
          Length = 1013

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +3

Query: 75  KTYVTPRR-PFEKARLDQ-ELKIIGEYGLRNKREVWRVKYT 191
           K ++ PRR P  +    Q E K   EYG RN  E W +  T
Sbjct: 479 KYFIKPRRHPESECSATQTEYKFTSEYGKRNSSECWAMTTT 519


>At3g29060.1 68416.m03635 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 794

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 366 APRSPQSSNRAHNPVSSVSH 307
           A RSP+ S++ HNP+SS  H
Sbjct: 93  ASRSPKKSHKHHNPLSSKRH 112


>At4g15880.1 68417.m02413 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; low similarity to
           sentrin/SUMO-specific protease [Homo sapiens]
           GI:6906859;  identical to cDNA hypothetical protein,
           partial (1189 bp) GI:2326349
          Length = 489

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 60  PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREV 173
           P    K    PR PF     D+E ++   +  RN+R+V
Sbjct: 242 PKTVEKRVEVPREPFIPLTEDEEAEVYRAFSGRNRRKV 279


>At1g46912.1 68414.m05219 F-box family protein-related contains weak
           hit to TIGRFAM TIGR01640 : F-box protein interaction
           domain; similar to hypothetical protein GI:4589954 from
           [Arabidopsis thaliana] contains weak hit to TIGRFAM
           TIGR01640 : F-box protein interaction domain;
          Length = 312

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 256 CLKAMLYYVVWLGSEC 303
           C+  +LYY+ WL + C
Sbjct: 148 CINGVLYYIAWLKNRC 163


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,432,539
Number of Sequences: 28952
Number of extensions: 203935
Number of successful extensions: 583
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)