Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E07
         (179 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0554 + 23221374-23222017,23222158-23222296                       27   2.8  
02_01_0751 - 5576675-5577979                                           26   4.9  
01_06_1355 + 36610390-36610479,36611906-36612063,36612144-366125...    25   8.6  

>01_05_0554 + 23221374-23222017,23222158-23222296
          Length = 260

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 7   GSRRTLLGHKSKITVNIISSN 69
           GSR+ LLG + +IT N+ S N
Sbjct: 89  GSRKVLLGSEMRITDNVTSKN 109


>02_01_0751 - 5576675-5577979
          Length = 434

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 142 CYLHQIWNRRFHGY 101
           C +H +WNRRF+ +
Sbjct: 253 CPVHAVWNRRFYAH 266


>01_06_1355 +
           36610390-36610479,36611906-36612063,36612144-36612523,
           36612600-36613583,36614228-36614292,36614946-36615024,
           36615480-36615529,36616595-36616781,36617922-36617957,
           36619226-36619348,36619466-36620386,36620506-36620636
          Length = 1067

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -3

Query: 171 TTPTASIAKFVTSTKFGTAVSTAIIPTTRHFLF*VRTDDVNSNFRFMSKQGPPRPS 4
           TT TA +    TSTK     +T ++PT         +D   +N  +   +GPP PS
Sbjct: 813 TTATAIVHYNTTSTKKN---ATPVMPTMPQ-----SSDSATANAFYFGLRGPPSPS 860


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,817,429
Number of Sequences: 37544
Number of extensions: 45116
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 14,793,348
effective HSP length: 39
effective length of database: 13,329,132
effective search space used: 266582640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)