Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_E07
(179 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF040661-9|AAG24214.1| 345|Caenorhabditis elegans Hypothetical ... 27 1.3
U00065-8|AAL02473.1| 501|Caenorhabditis elegans Hypothetical pr... 26 3.1
U00065-7|AAL02474.1| 1090|Caenorhabditis elegans Hypothetical pr... 26 3.1
U00065-6|AAL02472.1| 1051|Caenorhabditis elegans Hypothetical pr... 26 3.1
Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical p... 25 5.4
U58749-10|AAK18879.1| 465|Caenorhabditis elegans Temporarily as... 25 5.4
Z80344-2|CAB02487.3| 608|Caenorhabditis elegans Hypothetical pr... 25 7.1
U52003-8|AAM97990.1| 441|Caenorhabditis elegans Hypothetical pr... 25 7.1
U52003-7|AAM97989.1| 555|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z81482-5|CAB03956.3| 409|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical pr... 25 9.4
U72211-1|AAB97099.1| 409|Caenorhabditis elegans putative transc... 25 9.4
U55363-12|AAA97969.1| 320|Caenorhabditis elegans Hypothetical p... 25 9.4
>AF040661-9|AAG24214.1| 345|Caenorhabditis elegans Hypothetical
protein W10G11.5 protein.
Length = 345
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -3
Query: 174 STTPTASIAKFVTSTKFGTAVSTAIIPTT 88
+T T I VTST T V+T IPTT
Sbjct: 102 TTVTTTPIPTTVTSTHIPTTVTTTSIPTT 130
>U00065-8|AAL02473.1| 501|Caenorhabditis elegans Hypothetical
protein D1044.2b protein.
Length = 501
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 177 ISTTPTASIAKFVTSTKFGTAVSTAIIPT 91
IST T ++ T+TK T +T +IPT
Sbjct: 318 ISTETTTEMSSTTTTTKAHTTTTTMMIPT 346
>U00065-7|AAL02474.1| 1090|Caenorhabditis elegans Hypothetical
protein D1044.2c protein.
Length = 1090
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 177 ISTTPTASIAKFVTSTKFGTAVSTAIIPT 91
IST T ++ T+TK T +T +IPT
Sbjct: 868 ISTETTTEMSSTTTTTKAHTTTTTMMIPT 896
>U00065-6|AAL02472.1| 1051|Caenorhabditis elegans Hypothetical
protein D1044.2a protein.
Length = 1051
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 177 ISTTPTASIAKFVTSTKFGTAVSTAIIPT 91
IST T ++ T+TK T +T +IPT
Sbjct: 868 ISTETTTEMSSTTTTTKAHTTTTTMMIPT 896
>Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical
protein C30H6.4 protein.
Length = 476
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 174 STTPTASIAKFVTSTKFGTAVSTAIIPTTR 85
+TTP+ + TST T+ ST I TT+
Sbjct: 316 TTTPSTTSTPTTTSTTTTTSASTTTISTTK 345
>U58749-10|AAK18879.1| 465|Caenorhabditis elegans Temporarily
assigned gene nameprotein 224 protein.
Length = 465
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = -2
Query: 172 YHPHCLHCQICYLHQIWNRRFHGYYSN 92
YHP+C C+ C Q+ + +Y N
Sbjct: 297 YHPNCFRCETC--RQLLVDNIYFFYKN 321
>Z80344-2|CAB02487.3| 608|Caenorhabditis elegans Hypothetical
protein F15D4.4 protein.
Length = 608
Score = 25.0 bits (52), Expect = 7.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 174 STTPTASIAKFVTSTKFGTAVSTAIIPTTRHFL 76
+T PT + T+T T ++T +PTT +L
Sbjct: 87 TTIPTTTPTSTQTTTPTTTTITTTPVPTTTPYL 119
>U52003-8|AAM97990.1| 441|Caenorhabditis elegans Hypothetical
protein ZK381.5b protein.
Length = 441
Score = 25.0 bits (52), Expect = 7.1
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = -2
Query: 172 YHPHCLHCQIC 140
YHP C CQ C
Sbjct: 58 YHPSCFRCQTC 68
>U52003-7|AAM97989.1| 555|Caenorhabditis elegans Hypothetical
protein ZK381.5a protein.
Length = 555
Score = 25.0 bits (52), Expect = 7.1
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = -2
Query: 172 YHPHCLHCQIC 140
YHP C CQ C
Sbjct: 172 YHPSCFRCQTC 182
>Z81482-5|CAB03956.3| 409|Caenorhabditis elegans Hypothetical
protein C40H5.5 protein.
Length = 409
Score = 24.6 bits (51), Expect = 9.4
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -2
Query: 172 YHPHCLHCQIC 140
YH +CL CQ+C
Sbjct: 130 YHNNCLRCQMC 140
>Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical
protein F56H9.6 protein.
Length = 245
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 174 STTPTASIAKFVTSTKFGTAVSTAIIPTT 88
+TTPT + T+T T+ +T PTT
Sbjct: 76 TTTPTTTTTTTPTTTTSTTSTTTTTTPTT 104
>U72211-1|AAB97099.1| 409|Caenorhabditis elegans putative
transcription factor TTX-3 protein.
Length = 409
Score = 24.6 bits (51), Expect = 9.4
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -2
Query: 172 YHPHCLHCQIC 140
YH +CL CQ+C
Sbjct: 130 YHNNCLRCQMC 140
>U55363-12|AAA97969.1| 320|Caenorhabditis elegans Hypothetical
protein ZC404.11 protein.
Length = 320
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 157 LHCQICYLHQIWNRRFHGYYSNHQT 83
L C I L Q++ R F YS++QT
Sbjct: 86 LGCAIAGLSQLYLRNFSDNYSSYQT 110
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,206,142
Number of Sequences: 27780
Number of extensions: 40500
Number of successful extensions: 185
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 12,740,198
effective HSP length: 40
effective length of database: 11,628,998
effective search space used: 220950962
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -