Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E07
         (179 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72680.1 68414.m08405 cinnamyl-alcohol dehydrogenase, putativ...    29   0.43 
At4g39480.1 68417.m05585 cytochrome P450 family protein contains...    25   5.3  
At4g22110.2 68417.m03197 alcohol dehydrogenase, putative similar...    25   5.3  
At4g22110.1 68417.m03196 alcohol dehydrogenase, putative similar...    25   5.3  
At3g63100.1 68416.m07087 glycine-rich protein                          25   9.3  

>At1g72680.1 68414.m08405 cinnamyl-alcohol dehydrogenase, putative
           similar to cinnamyl-alcohol dehydrogenase GB:AAC35846
           [Medicago sativa], SP|Q08350 [Picea abies]
          Length = 355

 Score = 29.1 bits (62), Expect = 0.43
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 154 HCQICYLHQIWNRRFHG 104
           HC +CY   IW+R  HG
Sbjct: 44  HCGVCYADVIWSRNQHG 60


>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 989

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 74  NRKCLVVGIIAVETAVPNLVEVTNLAMEAVG 166
           +++CL+V I  V   +  ++EVTNL     G
Sbjct: 511 SKRCLLVEIHRVYDFITEILEVTNLTYPCTG 541


>At4g22110.2 68417.m03197 alcohol dehydrogenase, putative similar to
           alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
           esculentum]; contains Pfam zinc-binding dehydrogenase
           domain PF00107
          Length = 389

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -2

Query: 175 IYHPHCLHCQICYLHQI-WNRRF-HGYYSNHQTFSI 74
           ++HPHC  C+ C   +  W  RF   + SN + + +
Sbjct: 102 VFHPHCEECRDCKSSKSNWCARFADDFLSNTRRYGM 137


>At4g22110.1 68417.m03196 alcohol dehydrogenase, putative similar to
           alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
           esculentum]; contains Pfam zinc-binding dehydrogenase
           domain PF00107
          Length = 389

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -2

Query: 175 IYHPHCLHCQICYLHQI-WNRRF-HGYYSNHQTFSI 74
           ++HPHC  C+ C   +  W  RF   + SN + + +
Sbjct: 102 VFHPHCEECRDCKSSKSNWCARFADDFLSNTRRYGM 137


>At3g63100.1 68416.m07087 glycine-rich protein 
          Length = 199

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
 Frame = -2

Query: 178 HIYHPHCLHCQICYLHQIWN-RRFHGYYSNH 89
           H Y   C HC  C+ H   +  R HG+   H
Sbjct: 62  HDYGRDCCHCDHCHGHGYGHGHREHGHDRGH 92


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,997,036
Number of Sequences: 28952
Number of extensions: 35992
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 12,070,560
effective HSP length: 39
effective length of database: 10,941,432
effective search space used: 218828640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)