Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E05
         (451 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               87   5e-18
SB_45934| Best HMM Match : Gp-FAR-1 (HMM E-Value=2)                    32   0.25 
SB_3752| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.58 
SB_10027| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.31)                 30   0.77 
SB_35738| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_22061| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_23918| Best HMM Match : rve (HMM E-Value=0.013)                     28   3.1  
SB_8164| Best HMM Match : rve (HMM E-Value=0.00069)                    28   4.1  
SB_817| Best HMM Match : Peptidase_S28 (HMM E-Value=0)                 28   4.1  
SB_18995| Best HMM Match : rve (HMM E-Value=0.0012)                    27   5.4  
SB_31638| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_55003| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-35)                 27   9.5  
SB_36890| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 87.4 bits (207), Expect = 5e-18
 Identities = 40/65 (61%), Positives = 55/65 (84%)
 Frame = +2

Query: 194 MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 373
           MRYVAAYLLA LG   +P+A D++ IL SVGIE+D E+L KVISEL+GK+V+E+I+AG+ 
Sbjct: 650 MRYVAAYLLATLGNNKNPSAKDIKGILDSVGIESDMERLNKVISELSGKSVDEIIQAGKS 709

Query: 374 KLSSM 388
           KL+++
Sbjct: 710 KLATV 714


>SB_45934| Best HMM Match : Gp-FAR-1 (HMM E-Value=2)
          Length = 694

 Score = 31.9 bits (69), Expect = 0.25
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 242 SPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEEL 355
           SP+ AD+E IL   G E   EK+K+ +  L  K   +L
Sbjct: 540 SPSKADMEAILHDYGAELSEEKMKECMKALKTKKFSKL 577


>SB_3752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 242 SPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEEL 355
           +P+ AD++ IL   G+E   EK+K+ +  L  K   +L
Sbjct: 544 TPSKADMKAILHDYGVELSEEKMKEYMKALKTKKFSKL 581


>SB_10027| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.31)
          Length = 635

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 218 LAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEEL 355
           +AVL    +P  AD++ IL   G E   EK+K+ +  L  K   +L
Sbjct: 375 IAVLVDFYTPRKADMKAILHDYGAELSEEKMKEYMKALKTKKFSKL 420


>SB_35738| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1186

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 242 SPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEEL 355
           +P+ AD++ IL   G E   EK+K+ +  L  K   +L
Sbjct: 285 TPSKADIKAILHDYGAELSEEKMKEYMKALKTKKFSKL 322


>SB_22061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 905

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +2

Query: 230 GGKASPAAADVEKILSSVGIEADSEKL-KKVISELNGKNVEELIEAGRGKLS 382
           GG+   A+ D+E IL S  ++ DS  +  +VISE      E+L E  + KL+
Sbjct: 475 GGEGKKASEDLESILDSPHVDTDSRDVPPQVISETK----EKLEENSKSKLA 522


>SB_23918| Best HMM Match : rve (HMM E-Value=0.013)
          Length = 1785

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 242  SPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEEL 355
            +P+ AD+  IL   G E   EK+K+ +  L  K   +L
Sbjct: 909  TPSKADINVILHDYGAELSEEKMKENMKALKTKKFSKL 946


>SB_8164| Best HMM Match : rve (HMM E-Value=0.00069)
          Length = 1117

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 218 LAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIE 361
           +A L    +P+ AD++ IL   G E    K+K+ +  L    VEE++E
Sbjct: 367 IAALVVSYTPSKADIKAILHDYGAELSEGKMKEYMKAL---QVEEVLE 411


>SB_817| Best HMM Match : Peptidase_S28 (HMM E-Value=0)
          Length = 826

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 197 RYVAAYLLAVLGGKASPAAADVEKILSSVGIEAD 298
           R VA  +  V+GGKA P    VE +  SVG+  D
Sbjct: 774 RIVADDITGVIGGKAPPCQGKVEAV-GSVGVIGD 806


>SB_18995| Best HMM Match : rve (HMM E-Value=0.0012)
          Length = 1225

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 242 SPAAADVEKILSSVGIEADSEKLKKVI 322
           +P+ AD++ IL   G+E   EK+K+ +
Sbjct: 416 TPSKADMKAILHDYGVELSEEKMKEAL 442


>SB_31638| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1526

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +2

Query: 212  YLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKV 319
            +LL V  GKA   +   E +LSSV ++  SEKL+K+
Sbjct: 1345 WLLHVNRGKAFVNSQTKETLLSSVCLQTLSEKLEKL 1380


>SB_55003| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-35)
          Length = 303

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 136 CKTNILFSAIHVSCLSDLKNALRGR 210
           C   +L+ AI  S  +DL+N LRGR
Sbjct: 243 CLNPLLYGAISKSFRTDLRNFLRGR 267


>SB_36890| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1881

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 242  SPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEEL 355
            +P+ AD++ IL   G +   EK+K ++ E+   + EE+
Sbjct: 1369 TPSKADIKAILHDYGAQLSEEKMKYLV-EVKRMSAEEV 1405


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,648,157
Number of Sequences: 59808
Number of extensions: 156906
Number of successful extensions: 366
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)