Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E05
         (451 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)       75   2e-14
At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)       75   2e-14
At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)       75   2e-14
At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)       71   3e-13
At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)...    68   3e-12
At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)...    68   3e-12
At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)...    63   1e-10
At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)...    62   2e-10
At3g47330.1 68416.m05144 hypothetical protein contains Pfam prof...    28   2.5  
At3g47460.1 68416.m05161 SMC2-like condensin, putative similar t...    28   3.4  
At5g16690.1 68418.m01954 origin recognition complex subunit 3-re...    27   7.7  
At3g63200.1 68416.m07100 patatin-related low similarity to patat...    27   7.7  
At1g71060.1 68414.m08201 pentatricopeptide (PPR) repeat-containi...    27   7.7  

>At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)
          Length = 115

 Score = 74.9 bits (176), Expect = 2e-14
 Identities = 35/65 (53%), Positives = 50/65 (76%)
 Frame = +2

Query: 194 MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 373
           M+ VAAYLLAVL GKASP +AD++ IL SVG E +  +++ ++ E+ GK++ ELI AGR 
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 374 KLSSM 388
           KL+S+
Sbjct: 61  KLASV 65


>At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)
          Length = 115

 Score = 74.9 bits (176), Expect = 2e-14
 Identities = 35/65 (53%), Positives = 50/65 (76%)
 Frame = +2

Query: 194 MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 373
           M+ VAAYLLAVL GKASP +AD++ IL SVG E +  +++ ++ E+ GK++ ELI AGR 
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 374 KLSSM 388
           KL+S+
Sbjct: 61  KLASV 65


>At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)
          Length = 115

 Score = 74.9 bits (176), Expect = 2e-14
 Identities = 35/65 (53%), Positives = 50/65 (76%)
 Frame = +2

Query: 194 MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 373
           M+ VAAYLLAVL GKASP +AD++ IL SVG E +  +++ ++ E+ GK++ ELI AGR 
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 374 KLSSM 388
           KL+S+
Sbjct: 61  KLASV 65


>At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)
          Length = 115

 Score = 71.3 bits (167), Expect = 3e-13
 Identities = 33/65 (50%), Positives = 48/65 (73%)
 Frame = +2

Query: 194 MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 373
           M+ VAA+LLAVL GKASP   D++ IL SVG E +  +++ ++ E+ GK++ ELI AGR 
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 374 KLSSM 388
           KL+S+
Sbjct: 61  KLASV 65


>At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)
           acidic ribosomal protein P2, maize,  PIR:S54179
          Length = 111

 Score = 68.1 bits (159), Expect = 3e-12
 Identities = 29/65 (44%), Positives = 50/65 (76%)
 Frame = +2

Query: 194 MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 373
           M+  AA+LLAVLGG A+P+A +++ I+ +VG + D E ++ ++ E++GK++ ELI +GR 
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 374 KLSSM 388
           KL+S+
Sbjct: 61  KLASV 65


>At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)
           acidic ribosomal protein P2, maize,  PIR:S54179
          Length = 111

 Score = 68.1 bits (159), Expect = 3e-12
 Identities = 29/65 (44%), Positives = 50/65 (76%)
 Frame = +2

Query: 194 MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 373
           M+  AA+LLAVLGG A+P+A +++ I+ +VG + D E ++ ++ E++GK++ ELI +GR 
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 374 KLSSM 388
           KL+S+
Sbjct: 61  KLASV 65


>At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)
           acidic ribosomal protein P2, Parthenium
           argentatum,SWISSPROT:RLA2_PARAR
          Length = 114

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 30/65 (46%), Positives = 44/65 (67%)
 Frame = +2

Query: 194 MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 373
           M+ VAAYLLA L G  +P+ AD++KI+ SVG E D EK+    S +  ++V ELI  GR 
Sbjct: 1   MKVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGRE 60

Query: 374 KLSSM 388
           K++++
Sbjct: 61  KMAAL 65


>At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)
           similar to acidic ribosomal protein P2b (rpp2b)
           GB:U62753 GI:2431770 from [Zea mays]
          Length = 115

 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 30/65 (46%), Positives = 44/65 (67%)
 Frame = +2

Query: 194 MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 373
           M+ +AA+LLA LGG  +P + D++KIL SVG E D  K+  + S +   +V ELI AGR 
Sbjct: 1   MKVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGRE 60

Query: 374 KLSSM 388
           K+S++
Sbjct: 61  KMSAL 65


>At3g47330.1 68416.m05144 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 664

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +2

Query: 218 LAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAG 367
           L +  G   PA   +E  LS    E+D E  KK IS+   K+V   +E+G
Sbjct: 588 LVIHSGIRDPAPPTIES-LSDGSDESDEEDKKKQISKKKRKHVGPTLESG 636


>At3g47460.1 68416.m05161 SMC2-like condensin, putative similar to
            SMC2-like condensin (TITAN3) [Arabidopsis thaliana]
            GI:14279543; contains Pfam profiles PF02483: SMC family
            C-terminal domain, PF02463: RecF/RecN/SMC N terminal
            domain
          Length = 1171

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 287  IEADSEKLKKVISELNGKNVEEL 355
            IE D  K+KKVI EL+ K  E L
Sbjct: 1003 IETDKSKIKKVIEELDEKKKETL 1025


>At5g16690.1 68418.m01954 origin recognition complex subunit
           3-related / ORC3-related low similarity to SP|Q9UBD5
           Origin recognition complex subunit 3 (Origin recognition
           complex subunit Latheo) {Homo sapiens}
          Length = 556

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 288 LRQTLRN*RRLSPSSMAKMLKS 353
           +R+ LR  R LSPS ++ MLKS
Sbjct: 420 IRRVLRKLRDLSPSQLSSMLKS 441


>At3g63200.1 68416.m07100 patatin-related low similarity to
           patatin-like latex protein allergen Hev b 7 - Hevea
           brasiliensis, EMBL:AF113546; contains patatin domain
           PF01734
          Length = 384

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = +2

Query: 263 EKILSSVGIEADSEKLKKVISELNGKNVEELIE 361
           E++L   G+E     +K++++E NG+ +E  ++
Sbjct: 325 EELLKERGVETAPFGVKRILTESNGERIEGFVQ 357


>At1g71060.1 68414.m08201 pentatricopeptide (PPR) repeat-containing
           protein low similarity to CRP1 [Zea mays] GI:3289002;
           contains Pfam profile PF01535: PPR repeat
          Length = 510

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 251 AADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLS 382
           A+ VE  +S+     D+E++ K++++     VE L+     KLS
Sbjct: 50  ASSVETQVSANDASQDAERICKILTKFTDSKVETLLNEASVKLS 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,436,717
Number of Sequences: 28952
Number of extensions: 115412
Number of successful extensions: 335
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)