Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_E04
(573 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 234 3e-62
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 229 2e-60
06_02_0103 - 11829343-11829699,11831560-11831826,11832239-118325... 30 1.5
03_01_0548 + 4099386-4099847,4100435-4101316 29 3.5
03_01_0547 + 4093196-4093657,4094267-4095148 29 3.5
03_01_0544 + 4082528-4082989,4083585-4084466 29 3.5
03_01_0543 + 4076981-4077442,4078145-4079026 29 3.5
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201... 27 8.0
07_03_0865 + 22130880-22130921,22131938-22132170,22132268-221323... 27 8.0
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 234 bits (573), Expect = 3e-62
Identities = 112/142 (78%), Positives = 126/142 (88%), Gaps = 1/142 (0%)
Frame = +1
Query: 151 EIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTN 327
E+KLF RWS DVQV+D+SL DY++V K+A YLPH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 10 EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCPIVERLTN 69
Query: 328 SLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTV 507
SLMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV+V AIINSGPRED+TRIG AG V
Sbjct: 70 SLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAV 129
Query: 508 RRQAVDVSPLRRVNQAIWLLCT 573
RRQAVD+SPLRRVNQAI+LL T
Sbjct: 130 RRQAVDISPLRRVNQAIYLLTT 151
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 229 bits (559), Expect = 2e-60
Identities = 109/141 (77%), Positives = 124/141 (87%), Gaps = 1/141 (0%)
Frame = +1
Query: 154 IKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNS 330
+KLF WS DVQV+D+SL DY++V K+A YLPH+AGRY+ KRFRKAQCP+VERLTNS
Sbjct: 12 VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAGRYSAKRFRKAQCPLVERLTNS 71
Query: 331 LMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVR 510
LMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV+V AIINSGPRED+TRIG AG VR
Sbjct: 72 LMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAVR 131
Query: 511 RQAVDVSPLRRVNQAIWLLCT 573
RQAVD+SPLRRVNQAI+LL T
Sbjct: 132 RQAVDISPLRRVNQAIYLLTT 152
>06_02_0103 -
11829343-11829699,11831560-11831826,11832239-11832559,
11833783-11833844,11835413-11835446,11835539-11835619
Length = 373
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = +1
Query: 82 EEVADAGGMVVDNMPLPQPADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLP 255
+E+ G MVV L + +D P+ +L W+ +SDM+L+ IS ++ + Y+P
Sbjct: 214 QEIVPGGRMVVSL--LVKRSDKPDTELIQPWTPAVTALSDMALRGVISKEKLDSFYIP 269
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -1
Query: 120 VVHNHAARVGDFFGPVLLSHISHFYSQFTNYNLALSKAS 4
++ NH ++G+ + PVL H SH +F + + S
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRS 371
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -1
Query: 120 VVHNHAARVGDFFGPVLLSHISHFYSQFTNYNLALSKAS 4
++ NH ++G+ + PVL H SH +F + + S
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRS 371
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -1
Query: 120 VVHNHAARVGDFFGPVLLSHISHFYSQFTNYNLALSKAS 4
++ NH ++G+ + PVL H SH +F + + S
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRS 371
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -1
Query: 120 VVHNHAARVGDFFGPVLLSHISHFYSQFTNYNLALSKAS 4
++ NH ++G+ + PVL H SH +F + + S
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRS 371
>07_03_1503 + 27017933-27018063,27019668-27019727,27019996-27020101,
27020254-27020325,27021008-27021061,27021707-27021856,
27022206-27022547,27022651-27024684,27024706-27024947,
27025658-27026235,27026329-27028183,27028533-27028851,
27028980-27029417
Length = 2126
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 310 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTG 420
+ L ++HG N ++++AV +K +I+HLL G
Sbjct: 1328 ISALVVGSVIHGVVNIERMVAVLKIKDGLDILHLLRG 1364
>07_03_0865 +
22130880-22130921,22131938-22132170,22132268-22132385,
22132474-22132656,22132859-22132960
Length = 225
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +3
Query: 186 RSSIGHVFAGLYFGKREVCKIFTTFCWQVRSQTIP*SSVPYCG 314
R+S+G GL FG+ V + TT Q S +IP VP G
Sbjct: 19 RASLGKPVKGLGFGRERVPRTATTITCQAAS-SIPADRVPDMG 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,113,452
Number of Sequences: 37544
Number of extensions: 343030
Number of successful extensions: 853
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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