Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E04
         (573 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)               272   1e-73
SB_12584| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)                  29   3.6  
SB_28991| Best HMM Match : EGF_2 (HMM E-Value=2.9e-06)                 28   4.7  
SB_18806| Best HMM Match : RVT_1 (HMM E-Value=1.7e-14)                 28   4.7  

>SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)
          Length = 272

 Score =  272 bits (667), Expect = 1e-73
 Identities = 125/144 (86%), Positives = 137/144 (95%)
 Frame = +1

Query: 142 DIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERL 321
           ++P+IKLFG+WS  DVQVSD+SL DYI+VKEKY+ YLPH+AGRYA KRFRKAQCPIVER+
Sbjct: 81  EVPDIKLFGKWSTEDVQVSDISLTDYIAVKEKYSTYLPHTAGRYAAKRFRKAQCPIVERI 140

Query: 322 TNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAG 501
           TNS+MMHGRNNGKKLM VRI+KH+FEIIHLLTGENPLQVLV AIINSGPREDSTRIGRAG
Sbjct: 141 TNSMMMHGRNNGKKLMTVRIIKHSFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAG 200

Query: 502 TVRRQAVDVSPLRRVNQAIWLLCT 573
           TVRRQAVDVSPLRRVNQAIWLLCT
Sbjct: 201 TVRRQAVDVSPLRRVNQAIWLLCT 224



 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 16/23 (69%), Positives = 21/23 (91%)
 Frame = +1

Query: 142 DIPEIKLFGRWSCYDVQVSDMSL 210
           ++P+IKLFG+WS  DVQVSD+SL
Sbjct: 18  EVPDIKLFGKWSTEDVQVSDISL 40


>SB_12584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 692

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 29/99 (29%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
 Frame = +2

Query: 116 TTCHYHSRLIFPKSNFLGDGVVMTFKYRTCLCRIIFR*KRSMQNIYHILLAGTLTNDSVK 295
           TT H  SR+ FP+ + L D     F+        I R   S Q I  I     L   SV 
Sbjct: 106 TTPHGGSRIQFPEISNLTDSDCTAFQAEEMPFGKIIRCTCSTQTISTICCGKALQPISVA 165

Query: 296 LSALLWSV*LTP**CTAAIMVRNLW-LYVSLNMPLKLFT 409
              L W    TP      + V +LW + V+L     + T
Sbjct: 166 EVCLQWQTAKTPQYSNRVVGVSSLWCIQVNLGTATSIAT 204


>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
          Length = 2053

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 231 FYRNIILQRHVRYLNVITTPSPKKFD 154
           FY   + QR +RY NV+T+P+  + D
Sbjct: 464 FYAEFVEQRVLRYANVLTSPTKSRKD 489


>SB_28991| Best HMM Match : EGF_2 (HMM E-Value=2.9e-06)
          Length = 263

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 119 TCHYHSRLIFPKSNFLGDGVVMTFKYRTCLC 211
           T  YH  L FP S  +G G+++     T LC
Sbjct: 188 TRFYHHHLFFPISFTIGAGIILAVFITTALC 218


>SB_18806| Best HMM Match : RVT_1 (HMM E-Value=1.7e-14)
          Length = 556

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 145 IPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 276
           IPE  L     C DV   +  LQ+++ + +KY  YL + A +Y+
Sbjct: 511 IPEEAL--NLECPDVDFRESVLQEFLLLDKKYESYLEYLALKYS 552


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,813,789
Number of Sequences: 59808
Number of extensions: 403189
Number of successful extensions: 979
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)