Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_E04
(573 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68751-1|CAA92971.1| 210|Caenorhabditis elegans Hypothetical pr... 254 3e-68
U58750-3|AAB00643.2| 350|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z73971-9|CAH04730.1| 522|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z73971-8|CAA98250.1| 488|Caenorhabditis elegans Hypothetical pr... 29 3.1
AY532645-1|AAS21318.1| 522|Caenorhabditis elegans egg laying de... 29 3.1
L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell l... 28 4.1
AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein. 28 4.1
Z98851-5|CAB11541.1| 596|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z98851-4|CAB11542.1| 607|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z68751-3|CAA92973.1| 760|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z92827-4|CAB07323.1| 722|Caenorhabditis elegans Hypothetical pr... 27 9.5
>Z68751-1|CAA92971.1| 210|Caenorhabditis elegans Hypothetical
protein T05E11.1 protein.
Length = 210
Score = 254 bits (622), Expect = 3e-68
Identities = 125/168 (74%), Positives = 137/168 (81%)
Frame = +1
Query: 70 ENWTEEVADAGGMVVDNMPLPQPADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKY 249
+NW E +V D P + PE+ LFG+WS V VSD+SL DYI VKEK AKY
Sbjct: 3 DNWGSE-----NVVADAAPA---TEAPEVALFGKWSLQSVNVSDISLVDYIPVKEKSAKY 54
Query: 250 LPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENP 429
LPHSAGR+ +RFRKA CPIVERL NSLMMHGRNNGKKLM VRIVKHAFEII+LLTGENP
Sbjct: 55 LPHSAGRFQVRRFRKAACPIVERLANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGENP 114
Query: 430 LQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCT 573
+QVLV A+INSGPREDSTRIGRAGTVRRQAVDV+PLRRVNQAIWLLCT
Sbjct: 115 VQVLVNAVINSGPREDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCT 162
>U58750-3|AAB00643.2| 350|Caenorhabditis elegans Hypothetical
protein F55G1.6 protein.
Length = 350
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 155 SNFLGDGVVMTFKYRTCLCRIIF 223
SN+L DG V+ +K + C CR +F
Sbjct: 124 SNYLEDGDVLGYKLKPCFCRKLF 146
>Z73971-9|CAH04730.1| 522|Caenorhabditis elegans Hypothetical
protein C50H2.2a protein.
Length = 522
Score = 28.7 bits (61), Expect = 3.1
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = -1
Query: 285 SFVSVPASRMW*IFCILLFY-RNIILQRHVRYLNVITTPSPKKFDFGNISRLW*WHVVHN 109
SF+ VP +W I +L ++ NI+++ + R L KK F + + N
Sbjct: 275 SFILVPVLSLWNIIPLLYYHLYNILVRFYCRTLIKSMNREHKKRHFSLKFYYEQFTRITN 334
Query: 108 HAARVGDFFGPVLL 67
VGD F P+LL
Sbjct: 335 VQEAVGDVFNPLLL 348
>Z73971-8|CAA98250.1| 488|Caenorhabditis elegans Hypothetical
protein C50H2.2b protein.
Length = 488
Score = 28.7 bits (61), Expect = 3.1
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = -1
Query: 285 SFVSVPASRMW*IFCILLFY-RNIILQRHVRYLNVITTPSPKKFDFGNISRLW*WHVVHN 109
SF+ VP +W I +L ++ NI+++ + R L KK F + + N
Sbjct: 241 SFILVPVLSLWNIIPLLYYHLYNILVRFYCRTLIKSMNREHKKRHFSLKFYYEQFTRITN 300
Query: 108 HAARVGDFFGPVLL 67
VGD F P+LL
Sbjct: 301 VQEAVGDVFNPLLL 314
>AY532645-1|AAS21318.1| 522|Caenorhabditis elegans egg laying
defective EGL-47A protein.
Length = 522
Score = 28.7 bits (61), Expect = 3.1
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = -1
Query: 285 SFVSVPASRMW*IFCILLFY-RNIILQRHVRYLNVITTPSPKKFDFGNISRLW*WHVVHN 109
SF+ VP +W I +L ++ NI+++ + R L KK F + + N
Sbjct: 275 SFILVPVLSLWNIIPLLYYHLYNILVRFYCRTLIKSMNREHKKRHFSLKFYYEQFTRITN 334
Query: 108 HAARVGDFFGPVLL 67
VGD F P+LL
Sbjct: 335 VQEAVGDVFNPLLL 348
>L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell
lineage protein 36 protein.
Length = 962
Score = 28.3 bits (60), Expect = 4.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 71 RTGPKKSPTRAAWLWTTCHYHS 136
+T P K +R W+ T C +HS
Sbjct: 254 KTTPSKKSSRVPWVCTVCEFHS 275
>AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein.
Length = 962
Score = 28.3 bits (60), Expect = 4.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 71 RTGPKKSPTRAAWLWTTCHYHS 136
+T P K +R W+ T C +HS
Sbjct: 254 KTTPSKKSSRVPWVCTVCEFHS 275
>Z98851-5|CAB11541.1| 596|Caenorhabditis elegans Hypothetical
protein H12I19.5b protein.
Length = 596
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -1
Query: 294 FTESFVSVPASRMW*IFCILLFYRNIILQRHVRYLNVITTP 172
F + ++ +P ++ I CI LF N+IL + R +++T P
Sbjct: 341 FEKKYLRLPDRQITKI-CIFLFLTNVILLEYPRVEDILTAP 380
>Z98851-4|CAB11542.1| 607|Caenorhabditis elegans Hypothetical
protein H12I19.5a protein.
Length = 607
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -1
Query: 294 FTESFVSVPASRMW*IFCILLFYRNIILQRHVRYLNVITTP 172
F + ++ +P ++ I CI LF N+IL + R +++T P
Sbjct: 341 FEKKYLRLPDRQITKI-CIFLFLTNVILLEYPRVEDILTAP 380
>Z68751-3|CAA92973.1| 760|Caenorhabditis elegans Hypothetical
protein T05E11.3 protein.
Length = 760
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 90 DFFGPVLLSHISHFYSQFTNYNLAL 16
DF P L ++ H YSQF N+++ L
Sbjct: 245 DFLEPDTLKNLVHKYSQFINFDIFL 269
>Z92827-4|CAB07323.1| 722|Caenorhabditis elegans Hypothetical
protein C29F7.5 protein.
Length = 722
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = -1
Query: 147 NISRLW*WHVVHNHAARVGDFFGPVLLSHISHF 49
+ S W WH+ H DFFG S S F
Sbjct: 42 SFSGFWHWHLTMQHCNNENDFFGSFNSSSNSPF 74
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,814,833
Number of Sequences: 27780
Number of extensions: 300603
Number of successful extensions: 714
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -