Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_E04
(573 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identi... 227 5e-60
At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) simila... 224 3e-59
At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) simila... 224 3e-59
At3g26180.2 68416.m03267 cytochrome P450 71B20, putative (CYP71B... 33 0.14
At3g26180.1 68416.m03266 cytochrome P450 71B20, putative (CYP71B... 33 0.14
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 29 2.2
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 29 2.2
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 29 2.2
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 29 2.2
At1g79400.1 68414.m09253 cation/proton exchanger, putative (CHX2... 28 5.1
At3g26235.1 68416.m03273 hypothetical protein 27 6.7
At1g79490.1 68414.m09264 pentatricopeptide (PPR) repeat-containi... 27 6.7
At4g34830.1 68417.m04942 pentatricopeptide (PPR) repeat-containi... 27 8.9
>At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identical
to GP:3043428
Length = 207
Score = 227 bits (554), Expect = 5e-60
Identities = 108/142 (76%), Positives = 125/142 (88%), Gaps = 1/142 (0%)
Frame = +1
Query: 151 EIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSAGRYAHKRFRKAQCPIVERLTN 327
E+KLF RWS DV V+D+SL DYI V+ K+A ++PH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 18 EVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTN 77
Query: 328 SLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTV 507
SLMMHGRNNGKKLMAVRIVKHA EIIHLL+ NP+QV++ AI+NSGPRED+TRIG AG V
Sbjct: 78 SLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVV 137
Query: 508 RRQAVDVSPLRRVNQAIWLLCT 573
RRQAVD+SPLRRVNQAI+LL T
Sbjct: 138 RRQAVDISPLRRVNQAIFLLTT 159
>At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) similar
to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
[Arabidopsis thaliana]
Length = 207
Score = 224 bits (548), Expect = 3e-59
Identities = 108/148 (72%), Positives = 127/148 (85%), Gaps = 1/148 (0%)
Frame = +1
Query: 133 QPADIPEIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPI 309
Q A E+KLF RW+ DV V+D+SL DYI V+ K+A ++PH+AGRY+ KRFRKAQCPI
Sbjct: 12 QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPI 71
Query: 310 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRI 489
VERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL+ NP+QV++ AI+NSGPRED+TRI
Sbjct: 72 VERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRI 131
Query: 490 GRAGTVRRQAVDVSPLRRVNQAIWLLCT 573
G AG VRRQAVD+SPLRRVNQAI+L+ T
Sbjct: 132 GSAGVVRRQAVDISPLRRVNQAIFLITT 159
>At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) similar
to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
[Arabidopsis thaliana]
Length = 207
Score = 224 bits (548), Expect = 3e-59
Identities = 108/148 (72%), Positives = 127/148 (85%), Gaps = 1/148 (0%)
Frame = +1
Query: 133 QPADIPEIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPI 309
Q A E+KLF RW+ DV V+D+SL DYI V+ K+A ++PH+AGRY+ KRFRKAQCPI
Sbjct: 12 QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPI 71
Query: 310 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRI 489
VERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL+ NP+QV++ AI+NSGPRED+TRI
Sbjct: 72 VERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRI 131
Query: 490 GRAGTVRRQAVDVSPLRRVNQAIWLLCT 573
G AG VRRQAVD+SPLRRVNQAI+L+ T
Sbjct: 132 GSAGVVRRQAVDISPLRRVNQAIFLITT 159
>At3g26180.2 68416.m03267 cytochrome P450 71B20, putative (CYP71B2)
identical to cytochrome P450 71B20 (SP:Q9LTM3)
[Arabidopsis thaliana]; similar to cytochrome P450
GB:O65784 [Arabidopsis thaliana]
Length = 368
Score = 33.1 bits (72), Expect = 0.14
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -1
Query: 246 FCILLFYRNIILQRHVRYLNVITTPSPKKFD-FGNISRLW*WHVVHNHAARVGDFFGPVL 70
FC++ I + +++L PSP KF GN+ ++ + H + + +GPV+
Sbjct: 8 FCLITLASLIFFAKKIKHLKWNLPPSPPKFPVIGNLHQI--GELPHRSLQHLAERYGPVM 65
Query: 69 LSH 61
L H
Sbjct: 66 LLH 68
>At3g26180.1 68416.m03266 cytochrome P450 71B20, putative (CYP71B2)
identical to cytochrome P450 71B20 (SP:Q9LTM3)
[Arabidopsis thaliana]; similar to cytochrome P450
GB:O65784 [Arabidopsis thaliana]
Length = 502
Score = 33.1 bits (72), Expect = 0.14
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -1
Query: 246 FCILLFYRNIILQRHVRYLNVITTPSPKKFD-FGNISRLW*WHVVHNHAARVGDFFGPVL 70
FC++ I + +++L PSP KF GN+ ++ + H + + +GPV+
Sbjct: 8 FCLITLASLIFFAKKIKHLKWNLPPSPPKFPVIGNLHQI--GELPHRSLQHLAERYGPVM 65
Query: 69 LSH 61
L H
Sbjct: 66 LLH 68
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -1
Query: 120 VVHNHAARVGDFFGPVLLSHISHFYSQFTNYNLALSKAS 4
++ NH ++G+ + PVL H SH +F+ + + S
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRS 371
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -1
Query: 120 VVHNHAARVGDFFGPVLLSHISHFYSQFTNYNLALSKAS 4
++ NH ++G+ + PVL H SH +F+ + + S
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRS 371
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -1
Query: 120 VVHNHAARVGDFFGPVLLSHISHFYSQFTNYNLALSKAS 4
++ NH ++G+ + PVL H SH +F+ + + S
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRS 371
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -1
Query: 120 VVHNHAARVGDFFGPVLLSHISHFYSQFTNYNLALSKAS 4
++ NH ++G+ + PVL H SH +F+ + + S
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRS 371
>At1g79400.1 68414.m09253 cation/proton exchanger, putative (CHX2)
monovalent cation:proton antiporter family 2 (CPA2)
member, PMID:11500563
Length = 783
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = -2
Query: 470 LGPELIIAVTRTCRGFSPVSR*IISKACLTIRTAISFLPLLRPC 339
+ P+L++ + + F+P++ I AC+ + + + +L LL+PC
Sbjct: 1 MDPKLLLCLPQGDELFNPLNTMFIQMACILVFSQLFYL-LLKPC 43
>At3g26235.1 68416.m03273 hypothetical protein
Length = 195
Score = 27.5 bits (58), Expect = 6.7
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = -1
Query: 456 NNSSHQNLQRVFTRQQVNNFKGMFNDTYSH-KFLTIIAAVHH*GVSQTLHNRALSFTESF 280
+NS+HQ + + ++Q F TYSH K + A V S++L R+LSF E
Sbjct: 68 SNSNHQLIAGLKYKRQYGYFMKNHRATYSHYKDGSSDARVE---ASKSLKTRSLSFKEEI 124
Query: 279 VSV 271
S+
Sbjct: 125 FSI 127
>At1g79490.1 68414.m09264 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 836
Score = 27.5 bits (58), Expect = 6.7
Identities = 22/89 (24%), Positives = 39/89 (43%)
Frame = +1
Query: 199 DMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVR 378
D+S Y V + AK K+ +++ C I + N+LMM N G A
Sbjct: 240 DLSFNAYNQVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPYKAFE 299
Query: 379 IVKHAFEIIHLLTGENPLQVLVTAIINSG 465
I + + LL G + ++++ ++ SG
Sbjct: 300 IYESMEKTDSLLDG-STYELIIPSLAKSG 327
>At4g34830.1 68417.m04942 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 749
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 256 HSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNG 357
HS+ + + KA P V TNSL + +NNG
Sbjct: 291 HSSAKSSRLPSLKAVSPAVTSATNSLFLDHKNNG 324
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,966,848
Number of Sequences: 28952
Number of extensions: 276207
Number of successful extensions: 719
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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