Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E03
         (427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    30   0.13 
SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|ch...    28   0.70 
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    26   2.1  
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   4.9  
SPAC6B12.18 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   4.9  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    25   6.5  
SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr...    24   8.6  
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    24   8.6  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    24   8.6  

>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 30.3 bits (65), Expect = 0.13
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 17  NRSARCAEWHIPQTNLAAHRKRDARRENESDTNCVTRI 130
           N+    AEWH  +T   + RK DA+R +  D N  +R+
Sbjct: 248 NKRRIFAEWHNRRTQGLSFRKTDAQRASRVDVNKASRL 285


>SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 272

 Score = 27.9 bits (59), Expect = 0.70
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 17  NRSARCAEWHIPQTNLAAHRKRDARRENESDTNCVTRI 130
           N+    AEWH  +      RK DA+R +  D N  +R+
Sbjct: 223 NKKRIFAEWHHRRQQGLTFRKTDAQRASRVDVNKASRL 260


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 179 NGLQLPITVPESSQKHRSLSHSLYHF 102
           N L+LP  VPE   +H  L  S++HF
Sbjct: 518 NSLKLPTVVPELEARH--LPSSVFHF 541


>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
 Frame = -3

Query: 317 SLSQSNQRVPNVLSW*HMSYVTLT*KPFNVSFQIIFY----QEKKKQIQDNGLQLPITVP 150
           S SQSN R  N +      Y  L  K  N SFQ + Y    QE+K  ++ + ++   TV 
Sbjct: 407 SASQSNLRRSNTVRPTSFYYEKLHIKNDNPSFQALPYETTTQERKPVVKPDSIK---TVK 463

Query: 149 ESSQKHRSLSHSLYH 105
              +K +     L H
Sbjct: 464 PEKKKSKGFFKKLMH 478


>SPAC6B12.18 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 73

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 228 EFSNYFLSGEEETDSG*RSAATDHCSREFTK 136
           E  +Y++S +E+       A  DHC+ EFTK
Sbjct: 30  EVDDYYISLKEQV-----RAMQDHCNEEFTK 55


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -3

Query: 233 NVSFQIIFYQEKKKQIQDNGLQLPITVPESSQKHR-SLSHSLYHFR-FRGARLSYD 72
           N+ F +  Y+E +++I    L   + V ES+++H+ S ++ LY  +  RG  L  D
Sbjct: 766 NIHFAMHAYEELEQKIDLQRLIEALDVAESTKRHKISATNYLYTIKVVRGEGLHPD 821


>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 357 KRSVAITNSNLILFIVTVKPASAKCII 277
           K+   IT S L   +V  KPA+  CI+
Sbjct: 488 KQFPKITQSELNAAVVVSKPAAGSCIV 514


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 191 QIQDNGLQLPITVPESSQKHRSLSHSLYHF 102
           Q ++ G+ L +T  +S      L HSL HF
Sbjct: 32  QDEEGGIDLCLTCFQSGCGETGLKHSLVHF 61


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 399 NEAESTGGSHDASFKRSV 346
           NE E+   SH+ SFK+ V
Sbjct: 34  NEVETESSSHEPSFKKDV 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,656,037
Number of Sequences: 5004
Number of extensions: 29494
Number of successful extensions: 77
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)