Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E03
         (427 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0766 - 36106116-36106230,36106598-36106716,36106880-361069...    29   2.1  
09_04_0593 - 18825741-18826702,18826994-18827875,18828687-188287...    28   2.7  
02_04_0209 - 20942021-20942181,20942354-20942420,20942651-209427...    27   4.8  
03_02_0507 - 8999902-9000649,9001106-9001225,9001314-9001394,900...    27   6.3  
09_02_0193 - 5626819-5627078,5627177-5627561                           27   8.3  
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162...    27   8.3  

>03_06_0766 - 36106116-36106230,36106598-36106716,36106880-36106960,
            36107062-36107118,36107350-36107373,36107810-36107909,
            36107983-36108053,36108132-36108236,36108674-36108847,
            36109406-36109555,36109701-36109871,36109968-36110024,
            36110107-36110142,36110165-36110357,36110439-36110578,
            36110960-36111166,36111442-36111498,36111711-36111809,
            36112289-36112408,36112865-36113032,36113450-36113510,
            36113611-36113720,36114132-36114263,36114344-36114511,
            36115118-36115182,36115242-36115372,36115450-36115487,
            36116272-36116373,36116480-36116537,36117479-36117580,
            36117695-36117909,36118158-36118307,36118699-36118858,
            36118984-36119042,36119287-36119443,36119536-36119681,
            36121376-36121648,36122889-36122891
          Length = 1457

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 312  VTVKPASAKCIILVTYVVCDFNLKTF*CEFSNYFLSGEEETDSG 181
            +T  P+S+KC ILV    C  ++       +N  L G+E+T  G
Sbjct: 1014 LTYTPSSSKCFILVVKCACHVHIL---MNLANGSLPGDEQTPHG 1054


>09_04_0593 -
           18825741-18826702,18826994-18827875,18828687-18828775,
           18828942-18829080,18829405-18829531,18829629-18829838
          Length = 802

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 348 VAITNSNLILFIVTVKPASAKCII 277
           VA  N   ++ IV  KPASA CII
Sbjct: 629 VAYNNKEFLIDIVETKPASAVCII 652


>02_04_0209 -
           20942021-20942181,20942354-20942420,20942651-20942743,
           20943026-20943119,20943690-20943762,20943865-20943973,
           20944564-20944663,20945389-20945487,20945571-20945641,
           20946067-20946144,20946317-20946403,20946538-20946636
          Length = 376

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -2

Query: 366 ASFKRSVAITNSNLILFIVTVKPASAKCIILVTYVVCDF 250
           ASF+ + A+    L+  +++++  S  C I++ Y+V  F
Sbjct: 301 ASFRLAFALVMGALMFMMMSLRQGSPICKIILLYIVASF 339


>03_02_0507 -
           8999902-9000649,9001106-9001225,9001314-9001394,
           9001591-9001613
          Length = 323

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -3

Query: 212 FYQEKKKQIQDNGLQLPITVPESSQKHRSLSHSLYHFRFRGARLSYD 72
           F ++K+K   +N +    +  E S KHRS S    H + R  +  YD
Sbjct: 165 FRKDKRKAHGNNNIDSGSSGSEESGKHRSHSEKRKHKKSRKHKRRYD 211


>09_02_0193 - 5626819-5627078,5627177-5627561
          Length = 214

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
 Frame = +1

Query: 253 VTYDICHQDN----TFGTRWFDCDNEEDQ 327
           VT+D  HQ N    TFG  W   DNE+ +
Sbjct: 77  VTFDTTHQTNFYDMTFGICWCFADNEDKE 105


>06_03_0510 -
           21615724-21615909,21615992-21616075,21616164-21616217,
           21616324-21616371,21616529-21616611,21616963-21617113,
           21617648-21617785,21617966-21618094,21618391-21618596,
           21618734-21618845,21619145-21619204,21619331-21619429,
           21619520-21619575,21620230-21620313,21621407-21621500
          Length = 527

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 316 EEDQITIGYRDAPFKGCIMRASS 384
           EE++I +GY D  F GC   AS+
Sbjct: 17  EENEIHVGYEDDQFGGCSCWASN 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,064,439
Number of Sequences: 37544
Number of extensions: 189423
Number of successful extensions: 459
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)