Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E03
         (427 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2)                      29   1.6  
SB_2396| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.1  
SB_22238| Best HMM Match : CMAS (HMM E-Value=3.5e-15)                  29   2.1  
SB_57625| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_40462| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_5683| Best HMM Match : SAND (HMM E-Value=0.073)                     27   8.6  

>SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2)
          Length = 939

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = -3

Query: 206 QEKKKQIQDNGLQLPITVPESSQKHRSLSHSLYHF 102
           +EK K  +++  +L +TVPE +++ R  ++SL  F
Sbjct: 420 REKGKHTKNDFQKLSVTVPEEAEERRGSAYSLMEF 454


>SB_2396| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = -2

Query: 363 SFKRSVAITNSNLILFIVTVKPASAKCIILVTYV 262
           S  R VA+TN +  L IVT K    +CIIL+T++
Sbjct: 52  SVNRYVAVTNVSRYLEIVTKK----RCIILITFI 81


>SB_22238| Best HMM Match : CMAS (HMM E-Value=3.5e-15)
          Length = 1605

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 89  RRENESDTNCVTRICAFVNSLEQ*SVAADRY 181
           R  N++DT C+ R   F   L+Q + AA+ Y
Sbjct: 453 RNLNKADTECIGRCAHFFKQLDQHAYAAEMY 483


>SB_57625| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1751

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 325  DPLHCHSQTSECQMY 281
            +P +CH+QTS CQ Y
Sbjct: 1483 EPTNCHAQTSGCQAY 1497


>SB_40462| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1580

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 316 EEDQITIGYRDAPFKGCIMRASSGFSFVTVRTS 414
           E D+I + + D P  G IM A + F +VT+ TS
Sbjct: 133 ELDKIFVTWGDLPQHGPIMLAWAVFRYVTMETS 165


>SB_5683| Best HMM Match : SAND (HMM E-Value=0.073)
          Length = 311

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 426 PPPDRCSNGNEAESTGGSHDASFKRSVAITNSNLIL 319
           PP   C+  N + S   SH++S   S    N+NLIL
Sbjct: 28  PPEKECNEQNTSSSATNSHESSGSCS-PTENNNLIL 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,903,163
Number of Sequences: 59808
Number of extensions: 228127
Number of successful extensions: 513
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)