Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E03
         (427 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g04842.1 68415.m00498 threonyl-tRNA synthetase, putative / th...    31   0.25 
At3g61710.2 68416.m06916 autophagy protein Apg6 family contains ...    29   1.7  
At3g61710.1 68416.m06915 autophagy protein Apg6 family contains ...    29   1.7  
At4g30900.1 68417.m04388 expressed protein                             27   4.0  
At3g26855.1 68416.m03360 hypothetical protein                          27   5.3  
At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50...    27   5.3  
At2g33640.1 68415.m04124 zinc finger (DHHC type) family protein ...    27   7.0  
At5g62090.2 68418.m07793 expressed protein                             26   9.3  
At5g62090.1 68418.m07792 expressed protein                             26   9.3  
At4g37420.1 68417.m05297 hypothetical protein contains Pfam prof...    26   9.3  
At1g21880.2 68414.m02739 peptidoglycan-binding LysM domain-conta...    26   9.3  
At1g21880.1 68414.m02738 peptidoglycan-binding LysM domain-conta...    26   9.3  

>At2g04842.1 68415.m00498 threonyl-tRNA synthetase, putative /
           threonine--tRNA ligase, putative similar to SP|P18256
           Threonyl-tRNA synthetase 2 (EC 6.1.1.3) (Threonine--tRNA
           ligase) (ThrRS) {Bacillus subtilis}; contains Pfam
           profiles PF00587: tRNA synthetase class II core domain
           (G, H, P, S and T), PF03129: Anticodon binding domain
          Length = 650

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = -3

Query: 242 KPFNVSFQIIFYQEKKKQIQDNGLQLPITVPESSQKHR-SLSHSLYH-FRFRG 90
           +P N  + I+ YQ K++  +D    LPI V E    +R  LS SL+  FR RG
Sbjct: 343 RPMNCPYHILLYQRKRQSYRD----LPIRVAELGTVYRYELSGSLHGLFRVRG 391


>At3g61710.2 68416.m06916 autophagy protein Apg6 family contains
           weak similarity to Beclin 1 (Coiled-coil myosin-like
           BCL2-interacting protein) (Protein GT197)
           (Swiss-Prot:Q14457) [Homo sapiens]; contains Pfam
           profile PF04111: Autophagy protein Apg6
          Length = 386

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -3

Query: 212 FYQEKKKQIQDNGLQLPITVPESSQKHRSLSHSLYHFRFRGARLS 78
           F +EKKK I++   +L   + E+ +++  ++H L    F+G R +
Sbjct: 217 FLKEKKK-IEEEERKLVAAIEETEKQNAEVNHQLKELEFKGNRFN 260


>At3g61710.1 68416.m06915 autophagy protein Apg6 family contains
           weak similarity to Beclin 1 (Coiled-coil myosin-like
           BCL2-interacting protein) (Protein GT197)
           (Swiss-Prot:Q14457) [Homo sapiens]; contains Pfam
           profile PF04111: Autophagy protein Apg6
          Length = 517

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -3

Query: 212 FYQEKKKQIQDNGLQLPITVPESSQKHRSLSHSLYHFRFRGARLS 78
           F +EKKK I++   +L   + E+ +++  ++H L    F+G R +
Sbjct: 217 FLKEKKK-IEEEERKLVAAIEETEKQNAEVNHQLKELEFKGNRFN 260


>At4g30900.1 68417.m04388 expressed protein
          Length = 254

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 316 EEDQITIGYRDAPFKGCIMRASSGFSFVTVRTSIGRW 426
           E+D   +    AP      +A+ G++F+ VR S+G W
Sbjct: 8   EQDLGMLMMNTAPSSSTRKKAARGWNFLVVRVSLGPW 44


>At3g26855.1 68416.m03360 hypothetical protein
          Length = 163

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 160 SLFQRVHKSTDPCHTVCIT 104
           SLF R+H    PC+ +C++
Sbjct: 96  SLFPRIHDERTPCNPICLS 114


>At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50)
           identical to DNA repair-recombination protein GI:7110148
           from [Arabidopsis thaliana]
          Length = 1316

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +2

Query: 14  LNRSARCAEWHIPQTNLAAHRKRDARRENESDTNCVTR-ICAFVNSLEQ*SVAADRYPES 190
           L+  +R AE  +    +      ++  ++  DT    R I + + +L+Q SV  D YP+ 
Sbjct: 598 LSLKSREAEKEVNMLQMKIQEVNNSLFKHNKDTESRKRYIESKLQALKQESVTIDAYPKL 657

Query: 191 VSSSPDKK 214
           + S+ DK+
Sbjct: 658 LESAKDKR 665


>At2g33640.1 68415.m04124 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 565

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 212 FYQEKKKQIQDNGLQLPITVPESSQKHRSLS 120
           ++Q+ + Q    G QLP+ +P  SQ HR LS
Sbjct: 534 YFQQVRSQ---RGDQLPVFMPTDSQLHRHLS 561


>At5g62090.2 68418.m07793 expressed protein
          Length = 816

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = -3

Query: 209 YQEKKKQIQDNGLQLPIT----VPESSQKHRSLSHSLYHFRFRGARLS 78
           +Q++++Q+Q  G+Q+ +T      E+S   R L   LYH R R +  S
Sbjct: 264 HQQQQQQLQQQGMQMQLTGGPRPYENSVCARRLMQYLYHQRQRPSESS 311


>At5g62090.1 68418.m07792 expressed protein
          Length = 816

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = -3

Query: 209 YQEKKKQIQDNGLQLPIT----VPESSQKHRSLSHSLYHFRFRGARLS 78
           +Q++++Q+Q  G+Q+ +T      E+S   R L   LYH R R +  S
Sbjct: 264 HQQQQQQLQQQGMQMQLTGGPRPYENSVCARRLMQYLYHQRQRPSESS 311


>At4g37420.1 68417.m05297 hypothetical protein contains Pfam profile
           PF01697: Domain of unknown function
          Length = 588

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 142 HKSTDPCHTVCITFVFAARVSLTMRG*VSLWYVP 41
           HK++   HT  + F+    VSL++ G +SL+Y P
Sbjct: 33  HKTSYRAHTTTLFFIL---VSLSLFGFISLYYSP 63


>At1g21880.2 68414.m02739 peptidoglycan-binding LysM
           domain-containing protein contains Pfam profile PF01476:
           LysM domain
          Length = 416

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 351 SVAITNSNLILFIVTVKPASAKCIILVTYVVCDFN 247
           S+   NSNL+L  +TV+  SA C +      CD+N
Sbjct: 276 SMQCRNSNLMLGNITVQQTSAGCNV----TTCDYN 306


>At1g21880.1 68414.m02738 peptidoglycan-binding LysM
           domain-containing protein contains Pfam profile PF01476:
           LysM domain
          Length = 316

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 351 SVAITNSNLILFIVTVKPASAKCIILVTYVVCDFN 247
           S+   NSNL+L  +TV+  SA C +      CD+N
Sbjct: 276 SMQCRNSNLMLGNITVQQTSAGCNV----TTCDYN 306


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,796,799
Number of Sequences: 28952
Number of extensions: 155684
Number of successful extensions: 356
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)