Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_E02
(549 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 29 0.60
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 27 1.8
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 27 1.8
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 26 3.2
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 26 4.2
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy... 25 5.6
SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 5.6
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 25 7.3
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 25 7.3
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 25 7.3
>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 314
Score = 28.7 bits (61), Expect = 0.60
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +1
Query: 52 QVIPVPQQHEEKTIVYVLSKKQDQPQDILVPQIENKPPTKPEVYFVKYKNKEDS 213
Q P+ Q E + +Y S D P+ + PP P+V+F K K DS
Sbjct: 102 QKYPLSDQVENSSNIYDPSSPPDSPRKQQT-HLGTIPPEHPDVFFHNLKKKLDS 154
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 370 NRIRKIPMNRIRKIPMHC*NRISLHARC 287
NR R++PM R R++ + C N + RC
Sbjct: 23 NRRRRVPMERRRRVVLACFNCKARKVRC 50
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 299 QTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQ 391
+T + LA+ SD + D +DP+H D+ +Q
Sbjct: 169 ETVAKLALENMDSDDIAADFTDPIHLDMESQ 199
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 10 KIIFVKTPSESRTPQVIPVPQQHEEK 87
K+ VK+PS+S +P + HEEK
Sbjct: 424 KVYPVKSPSDSHCKVSLPAVRDHEEK 449
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 25.8 bits (54), Expect = 4.2
Identities = 16/57 (28%), Positives = 21/57 (36%)
Frame = +2
Query: 257 KDKRSPSLVSTARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 427
K K ST+ + + + DP D + P RD S DY L RD
Sbjct: 360 KRKHEDDESSTSTKSSRTTKTPFTRVGDPSQWDFASPALRDNSFNFEDDYGTLANRD 416
>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 607
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 190 KYKNKEDSQAVIDDIVNDYNK 252
KYK + QA I ++VN +NK
Sbjct: 548 KYKEVHEKQAAIANMVNTFNK 568
>SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 125
Score = 25.4 bits (53), Expect = 5.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = +1
Query: 199 NKEDSQAVIDDIVNDYNKGQ 258
N+++ +VI D+++ YNKG+
Sbjct: 23 NEKEKNSVIPDVIDYYNKGR 42
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +1
Query: 25 KTPSESRTPQVIPVPQQHEEKTIVYVLSKKQDQPQDILVPQIENK 159
+TP E R +P PQ+ E + V ++K P P +K
Sbjct: 96 RTPEEPRKLPGVPAPQKQSEASSVNSSTEKLPPPPSYPGPNTAHK 140
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.0 bits (52), Expect = 7.3
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = +1
Query: 76 HEEKTIVYVLSKKQDQPQDILVPQIENKPPTKPEVYFVKYKNKEDSQAVIDDIV-NDYNK 252
HE+K+ +K +D + P + P K + Y YKN + + N Y
Sbjct: 296 HEDKSYTPTFNKIEDSNKKPSKPSLLQTQPLKRKNYSPWYKNNFGASTPASRVSRNPYTA 355
Query: 253 GQGQTVTF 276
Q + TF
Sbjct: 356 AQPRKHTF 363
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 91 IVYVLSKKQDQPQDILVPQIENKPPTKP 174
+V L K + P+D++V + + +P TKP
Sbjct: 1068 LVSRLLKGEPLPKDVVVKEFKPRPSTKP 1095
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.133 0.383
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,847,627
Number of Sequences: 5004
Number of extensions: 32168
Number of successful extensions: 103
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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