Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E02
         (549 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0115 + 851505-852368,852611-852730,853000-853020,853253-85...    28   4.3  
02_05_0496 - 29499959-29500653,29501039-29501093                       28   4.3  
06_02_0250 + 13474806-13475130,13475232-13475572                       27   7.5  
05_03_0040 - 7646525-7647775                                           27   7.5  
10_06_0128 - 11039565-11040119,11040727-11040997,11041123-110412...    27   9.9  

>07_01_0115 +
           851505-852368,852611-852730,853000-853020,853253-853369,
           853466-853555,853730-853837,853897-853932,853933-854022
          Length = 481

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +1

Query: 19  FVKTPSESRTPQVIPVPQQHEEKTIVYVLSKKQDQPQDILVPQIENKPPTKP 174
           F+ +PS   TP   P P   ++K++  + +     P     P  +  PPTKP
Sbjct: 172 FLASPSPKTTPTAPPPPTTTKKKSVKSLFNGLLSSP--FTRPSPKQPPPTKP 221


>02_05_0496 - 29499959-29500653,29501039-29501093
          Length = 249

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 49  PQVIPVPQQHEEKTIVYVLSKKQDQPQDILVPQIENKPPTKPE 177
           PQ  P P Q ++    +   + Q QPQ    P  ++ PP +P+
Sbjct: 79  PQTPPPPAQQQQHGPEHEHHQAQPQPQQEPPPPAQDAPPAEPK 121


>06_02_0250 + 13474806-13475130,13475232-13475572
          Length = 221

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/69 (23%), Positives = 27/69 (39%)
 Frame = +1

Query: 58  IPVPQQHEEKTIVYVLSKKQDQPQDILVPQIENKPPTKPEVYFVKYKNKEDSQAVIDDIV 237
           +PV +Q +        +   +   D   PQ    PP+K        +N +D Q +  +  
Sbjct: 109 VPVQEQTDAPPAATEAATATETTVDSPPPQAVVMPPSKKSKRSADGENADDDQGMNGNYG 168

Query: 238 NDYNKGQGQ 264
           N Y  G G+
Sbjct: 169 NGYGSGNGK 177


>05_03_0040 - 7646525-7647775
          Length = 416

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +1

Query: 4   RGKIIFVKTPSESRTPQVIPVPQQHEEKTIVYVLSKKQDQPQDILVPQIENKPPTKPE 177
           +G++ + K P     P+  P P+ H + T      + + +P+   VP+ E KP  KPE
Sbjct: 45  QGRVTYEKLPE----PEPKPKPKPHPKPT---PKPEPKPEPEPKPVPEPEPKPEPKPE 95


>10_06_0128 -
           11039565-11040119,11040727-11040997,11041123-11041217,
           11043553-11043642
          Length = 336

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -1

Query: 324 CTARTESVCMRAVETREGDRLSLPFVIIVDNVINNSLRVFLVLVF 190
           C  R+       +   +GD   +  +++V  +INNS ++F V+ F
Sbjct: 4   CMIRSRRCTRAMLIVEKGDDEEIQQLMVVRGIINNSSKIFRVVKF 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.133    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,887,554
Number of Sequences: 37544
Number of extensions: 199202
Number of successful extensions: 451
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)