Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_E02
(549 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43028| Best HMM Match : Cornifin (HMM E-Value=0.0019) 36 0.029
SB_38292| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.47
SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_5549| Best HMM Match : PT (HMM E-Value=1.9) 29 2.5
SB_22534| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_6260| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_5191| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_46614| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_56154| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_49036| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_14623| Best HMM Match : BDHCT (HMM E-Value=7.9) 27 7.6
SB_44796| Best HMM Match : Cornifin (HMM E-Value=1.7) 27 7.6
SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
>SB_43028| Best HMM Match : Cornifin (HMM E-Value=0.0019)
Length = 512
Score = 35.5 bits (78), Expect = 0.029
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 320 VHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 427
+H D +D +H D +D +H D + VH DY+ ++ D
Sbjct: 29 IHSDYTDTIHPDYTDIIHPDYTGIVHPDYTGIIHPD 64
Score = 34.3 bits (75), Expect = 0.067
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 287 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 427
T + D +H D +D +H D +D +H D + +H DY+ ++ D
Sbjct: 178 TGIIHPDYTGIIHPDYTDIIHPDYTDIIHPDYTGIIHPDYTGIIHPD 224
Score = 32.7 bits (71), Expect = 0.20
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 287 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 427
T + D +H +D +H D +D +H D + +H DY+ +V D
Sbjct: 10 TGIIHPDYTGIIHSGYTDIIHSDYTDTIHPDYTDIIHPDYTGIVHPD 56
Score = 31.9 bits (69), Expect = 0.36
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +2
Query: 296 MQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLV 418
+ +D +H D +D +H D + VH D + +H DY+ ++
Sbjct: 29 IHSDYTDTIHPDYTDIIHPDYTGIVHPDYTGIIHPDYTGII 69
Score = 31.9 bits (69), Expect = 0.36
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 287 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 427
T + D +H D +D +H D + +H D + +H DY+ ++ D
Sbjct: 218 TGIIHPDYTGIIHPDYTDIIHPDYTGIIHPDYTGIIHPDYTGIIYPD 264
Score = 31.9 bits (69), Expect = 0.36
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 287 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 427
T + D +H D +D +H D + +H D + +H DY+ ++ D
Sbjct: 354 TGIIHPDYTGIIHPDYTDIIHPDYTGIIHPDYTGIIHPDYTGIIYPD 400
Score = 31.5 bits (68), Expect = 0.47
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 287 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 427
T + D +H D + +H D +D +H D + +H DY+ ++ D
Sbjct: 114 TGIIHPDYTGIIHPDYTGIIHPDYTDIIHPDYTGIIHPDYTGIIHPD 160
Score = 31.5 bits (68), Expect = 0.47
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 287 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 427
T + D +H D +D +H D + +H D + +H DY+ ++ D
Sbjct: 122 TGIIHPDYTGIIHPDYTDIIHPDYTGIIHPDYTGIIHPDYTGIIHPD 168
Score = 31.5 bits (68), Expect = 0.47
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 287 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 427
T + D +H D + +H D +D +H D + +H DY+ ++ D
Sbjct: 146 TGIIHPDYTGIIHPDYTGIIHPDYTDIIHPDYTGIIHPDYTGIIHPD 192
Score = 31.5 bits (68), Expect = 0.47
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 287 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 427
T + D +H D +D +H D + +H D + +H DY+ ++ D
Sbjct: 154 TGIIHPDYTGIIHPDYTDIIHPDYTGIIHPDYTGIIHPDYTDIIHPD 200
Score = 31.5 bits (68), Expect = 0.47
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 287 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 427
T + D +H D +D +H D + +H D + +H DY+ ++ D
Sbjct: 186 TGIIHPDYTDIIHPDYTDIIHPDYTGIIHPDYTGIIHPDYTGIIHPD 232
Score = 31.5 bits (68), Expect = 0.47
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 287 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 427
T + D +H D + +H D +D +H D + +H DY+ ++ D
Sbjct: 210 TGIIHPDYTGIIHPDYTGIIHPDYTDIIHPDYTGIIHPDYTGIIHPD 256
Score = 31.5 bits (68), Expect = 0.47
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 287 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 427
T + D +H D + +H D +D +H D + +H DY+ ++ D
Sbjct: 290 TGIIHPDYTGIIHPDYTGIIHPDYTDIIHPDYTGIIHPDYTGIIHPD 336
Score = 31.5 bits (68), Expect = 0.47
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 287 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 427
T + D +H D +D +H D + +H D + +H DY+ ++ D
Sbjct: 298 TGIIHPDYTGIIHPDYTDIIHPDYTGIIHPDYTGIIHPDYTGIIHPD 344
Score = 31.5 bits (68), Expect = 0.47
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 287 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 427
T + D +H D + +H D +D +H D + +H DY+ ++ D
Sbjct: 346 TGIIHPDYTGIIHPDYTGIIHPDYTDIIHPDYTGIIHPDYTGIIHPD 392
Score = 31.5 bits (68), Expect = 0.47
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 287 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 427
T + D +H D + +H D +D +H D + +H DY+ ++ D
Sbjct: 426 TGIIHPDYTGIIHPDYTGIIHPDYTDIIHPDYTGIIHPDYTGIIHPD 472
Score = 31.5 bits (68), Expect = 0.47
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 287 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 427
T + D +H D +D +H D + +H D + +H DY+ ++ D
Sbjct: 434 TGIIHPDYTGIIHPDYTDIIHPDYTGIIHPDYTGIIHPDYTGIIHPD 480
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 287 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 427
T + D +H D + +H +D +H D + +H DY+ ++ D
Sbjct: 50 TGIVHPDYTGIIHPDYTGIIHSGYTDIIHPDYTGIIHPDYTDIIYPD 96
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +2
Query: 320 VHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 427
+H D + +H D +D ++ D + +H DY+ ++ D
Sbjct: 77 IHPDYTGIIHPDYTDIIYPDYTGIIHPDYTGIIHPD 112
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +2
Query: 320 VHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 427
+H D +D ++ D + +H D + +H DY+ ++ D
Sbjct: 85 IHPDYTDIIYPDYTGIIHPDYTGIIHPDYTGIIHPD 120
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 287 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 427
T + D +H D + +H D + +H D + +H DY+ ++ D
Sbjct: 98 TGIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTDIIHPD 144
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 287 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 427
T + D +H D + +H D + +H D + +H DY+ ++ D
Sbjct: 130 TGIIHPDYTDIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTDIIHPD 176
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +2
Query: 320 VHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 427
++ D +D +H D + +H D + +H DY+ ++ D
Sbjct: 269 IYPDYTDIIHPDYTGIIHPDYTGIIHPDYTGIIHPD 304
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 287 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 427
T + D +H D + +H D + +H D + +H DY+ ++ D
Sbjct: 306 TGIIHPDYTDIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTGIIHPD 352
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 287 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 427
T + D +H D + +H D + +H D + +H DY+ ++ D
Sbjct: 322 TGIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTGIIHPD 368
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 287 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 427
T + D +H D + +H D + +H D + +H DY+ ++ D
Sbjct: 330 TGIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTDIIHPD 376
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 287 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 427
T + D +H D + +H D + +H D + +H DY+ ++ D
Sbjct: 442 TGIIHPDYTDIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTGIIHPD 488
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 287 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 427
T + D +H D + +H D + +H D + +H DY+ ++ D
Sbjct: 458 TGIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTDIIHPD 504
Score = 28.3 bits (60), Expect = 4.4
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +2
Query: 320 VHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 427
+H D + +H D + +H D + +H DY+ ++ D
Sbjct: 205 IHPDYTGIIHPDYTGIIHPDYTGIIHPDYTDIIHPD 240
Score = 28.3 bits (60), Expect = 4.4
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +2
Query: 320 VHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 427
+H D + +H D + +H D + +H DY+ ++ D
Sbjct: 277 IHPDYTGIIHPDYTGIIHPDYTGIIHPDYTGIIHPD 312
Score = 28.3 bits (60), Expect = 4.4
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +2
Query: 320 VHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 427
+H D + +H D + +H D + +H DY+ ++ D
Sbjct: 285 IHPDYTGIIHPDYTGIIHPDYTGIIHPDYTDIIHPD 320
Score = 28.3 bits (60), Expect = 4.4
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +2
Query: 320 VHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 427
+H D + +H D + +H D + +H DY+ ++ D
Sbjct: 421 IHPDYTGIIHPDYTGIIHPDYTGIIHPDYTDIIHPD 456
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 287 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 427
T + D +H D + +H D + +H D + +H DY+ ++ D
Sbjct: 106 TGIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTDIIHPDYTGIIHPD 152
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 287 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 427
T + D +H D + +H D + +H D + +H DY+ ++ D
Sbjct: 162 TGIIHPDYTDIIHPDYTGIIHPDYTGIIHPDYTDIIHPDYTDIIHPD 208
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 287 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 427
T + D +H D + +H D + +H D + +H DY+ ++ D
Sbjct: 282 TGIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTDIIHPDYTGIIHPD 328
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 287 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 427
T + D +H D + +H D + +H D + +H DY+ ++ D
Sbjct: 338 TGIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTDIIHPDYTGIIHPD 384
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 287 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 427
T + D +H D + +H D + +H D + +H DY+ ++ D
Sbjct: 418 TGIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTDIIHPDYTGIIHPD 464
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 287 TARMQTDSVLAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRD 427
T + D +H D + +H D + +H D + +H DY+ ++ D
Sbjct: 466 TGIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTDIIHPDYTDIINPD 512
>SB_38292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 31.5 bits (68), Expect = 0.47
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +2
Query: 317 AVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRDRS 433
AV+RD S +R+ ++ V+RD S +R+ + V RDRS
Sbjct: 48 AVYRDRSHVTNRETTNAVYRDRSHVTNRETTNAVYRDRS 86
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +2
Query: 317 AVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVCRDRS 433
AV+RD S +R+ ++ V+RD S +R+ + + RD S
Sbjct: 64 AVYRDRSHVTNRETTNAVYRDRSHVTNRETTNAINRDGS 102
>SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = -3
Query: 400 PMNLSRKIPMNRIRKIPMNRIRK 332
P N +RK P NRIRK+ NR RK
Sbjct: 71 PHNRNRKEPGNRIRKVEHNRNRK 93
>SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/36 (50%), Positives = 19/36 (52%)
Frame = +2
Query: 314 LAVHRDLSDPVHRDLSDPVHRDLSAQVHRDYSVLVC 421
+ VH LS VH LS VH LS VH SV VC
Sbjct: 352 VTVHYCLSVTVHYCLSVTVHCCLSVTVHYCLSVTVC 387
>SB_5549| Best HMM Match : PT (HMM E-Value=1.9)
Length = 282
Score = 29.1 bits (62), Expect = 2.5
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 67 PQQH-EEKTIVYVLSKKQDQPQDILVPQIENKPPTKPEVYFVKYKNKEDSQAVIDDIVND 243
P+ H E+K K +D+P+D L + ENKP KP K K+++ + + +D+ D
Sbjct: 140 PEDHPEDKPDDKPEDKPEDKPEDKLEGKPENKPEKKP-----KAKSEDKPEDMPEDMPED 194
>SB_22534| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 339
Score = 28.7 bits (61), Expect = 3.3
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = -1
Query: 267 RLSLPFVIIVDNVINNSLRVFLVLVFDEI-NFRFCRWFIFDLRHENILRLILFLRENVDY 91
RL+L + V ++ N L LV + + NF R+FI +L ++L LI+F+ ++ Y
Sbjct: 21 RLTLYPLTFVVGLVGNVLVCVLVFTWRKTKNFNNSRYFILNLSISDLLVLIMFIPFDLAY 80
>SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3464
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 106 SKKQDQPQDILVPQIENKPPTKPEVYFVKYKNKEDSQAVIDDI 234
S+K+D + V ++++ P+K Y +KN++ DDI
Sbjct: 2848 SEKEDLKTEASVASVKSREPSKAHDYRFTFKNEKQEPKTEDDI 2890
>SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1276
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/87 (21%), Positives = 36/87 (41%)
Frame = +1
Query: 10 KIIFVKTPSESRTPQVIPVPQQHEEKTIVYVLSKKQDQPQDILVPQIENKPPTKPEVYFV 189
K+ F +S P+ P Q+ + ++Q Q Q++ ++E P PE
Sbjct: 740 KMGFPMEEPKSEVPEPDPEQQEAYLQQQQQQAEQQQQQQQNVAKSKVEQPPEPDPEAEGS 799
Query: 190 KYKNKEDSQAVIDDIVNDYNKGQGQTV 270
+ KE +ID +N +G ++
Sbjct: 800 AEEPKEKKSDIIDPFQYLHNMPEGASM 826
>SB_6260| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 600
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 49 PQVIPVPQQHEEKTI-VYVLSKKQDQPQDILVPQIENKPPTKPEVYFVKYK 198
P VPQ+ E + + VL K + P VPQ++++ P +V VKY+
Sbjct: 490 PLASDVPQEKNEGPLAIDVLQMKYEGPLASDVPQVKHERPLVSDVPQVKYE 540
Score = 27.9 bits (59), Expect = 5.8
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 49 PQVIPVPQ-QHEEKTIVYVLSKKQDQPQDILVPQIENKPPTKPEVYFVKYK 198
P VPQ +HE + V K + P VPQ +N+ P +V VKY+
Sbjct: 516 PLASDVPQVKHERPLVSDVPQVKYEGPLASDVPQEKNEGPLASDVLQVKYE 566
>SB_5191| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 368
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 49 PQVIPVPQQHEEKTI-VYVLSKKQDQPQDILVPQIENKPPTKPEVYFVKYK 198
P VPQ+ E + + VL K + P VPQ++++ P +V VKY+
Sbjct: 32 PLASDVPQEKNEGPLAIDVLQMKYEGPLASDVPQVKHERPLVSDVPQVKYE 82
Score = 27.9 bits (59), Expect = 5.8
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 49 PQVIPVPQ-QHEEKTIVYVLSKKQDQPQDILVPQIENKPPTKPEVYFVKYK 198
P VPQ +HE + V K + P VPQ +N+ P +V VKY+
Sbjct: 58 PLASDVPQVKHERPLVSDVPQVKYEGPLASDVPQEKNEGPLASDVLQVKYE 108
Score = 27.9 bits (59), Expect = 5.8
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Frame = +1
Query: 49 PQVIPVPQQHEEKTIVY-VLSKKQDQPQDILVPQIENKPPTKPEVYFVKYKN---KEDSQ 216
P VPQ+ +E + VL K + P VPQ++ + P +V VKY K S
Sbjct: 236 PLASDVPQEKDEGPLASDVLQVKYEGPLASDVPQVKYEGPLASDVPQVKYGGPLYKSVSH 295
Query: 217 AVIDDIVNDYNKGQGQ 264
ID ++ Y Q
Sbjct: 296 FSIDTVIPVYGANTKQ 311
>SB_46614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 388
Score = 28.3 bits (60), Expect = 4.4
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +1
Query: 79 EEKTIVYVLSKKQDQPQDILVPQIENKPP 165
E + ++ +L K+Q+ + +PQI+ KPP
Sbjct: 16 EAEALLKLLRKEQEFQNQVSIPQIQRKPP 44
>SB_56154| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 94 VYVLSKKQDQPQDILVPQIENKPPTKPEVYF 186
VY+L +K+D P D+ NK PT+ ++++
Sbjct: 83 VYMLVEKEDLPSDVPYVFSANKLPTQKQMFY 113
>SB_49036| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 696
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 254 GKDKRSPSLVSTARMQTDSVLAVHRDLSDPVHRDLSDP 367
G D + PS TA + + L+ DLS H + SDP
Sbjct: 175 GVDSKDPSNQCTASLSNQTDLSNQTDLSSQSHLNSSDP 212
>SB_14623| Best HMM Match : BDHCT (HMM E-Value=7.9)
Length = 441
Score = 27.5 bits (58), Expect = 7.6
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = +1
Query: 127 QDILVPQIENKPPTKPEVYFVKYKNKEDSQAVIDDI---VNDYNKGQG-QTVTFS 279
Q+ PQ +NKP K Y+N D++ V D+I V D ++ G QT +++
Sbjct: 106 QNAFRPQTDNKPWPKSCTENAPYENSIDAKTVQDNIKVMVKDLDRAGGVQTTSYA 160
>SB_44796| Best HMM Match : Cornifin (HMM E-Value=1.7)
Length = 165
Score = 27.5 bits (58), Expect = 7.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 323 HRDLSDPVHRDLSDPVHRDLSAQVHRD 403
HR+ + P + + + P HRD + Q HR+
Sbjct: 39 HRNTTTPRYHNTAIPQHRDTATQQHRN 65
>SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1822
Score = 27.5 bits (58), Expect = 7.6
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = -1
Query: 267 RLSLPFVIIVDNVINNSLRVFLVLVFDEINFRFCRWFIFDLRHENILRLILFL 109
R+SL F ++VD V+ S FL L+ D + F F+F L + +L L FL
Sbjct: 826 RVSLLF-LLVDTVLILSAFFFLFLLVDTVFISFAFLFLF-LLVDTVLILFAFL 876
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.314 0.133 0.383
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,116,936
Number of Sequences: 59808
Number of extensions: 248429
Number of successful extensions: 875
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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