Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E02
         (549 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05840.1 68418.m00642 expressed protein contains Pfam profile...    29   2.0  
At1g11210.1 68414.m01284 expressed protein contains similarity t...    28   4.7  
At5g49380.1 68418.m06111 hypothetical protein contains Pfam doma...    27   8.3  
At5g46610.1 68418.m05738 hypothetical protein contains Pfam prof...    27   8.3  
At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) iden...    27   8.3  

>At5g05840.1 68418.m00642 expressed protein contains Pfam profile
           PF04788: Protein of unknown function (DUF620);
           expression supported by MPSS
          Length = 439

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 323 HRDLSDPVHRDLSD-PVHRDLSAQVHRDYSVLVCRDRS 433
           H D  +P+H+D+ D P+   ++  + + Y   V  DR+
Sbjct: 91  HNDYENPIHKDIKDQPLEMSMAQYIVKQYIAAVGGDRA 128


>At1g11210.1 68414.m01284 expressed protein contains similarity to
           cotton fiber expressed protein 1 [Gossypium hirsutum]
           gi|3264828|gb|AAC33276
          Length = 308

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = +1

Query: 7   GKII-FVKTPSESRTPQVIPVPQQHEEKTIVYVLSKKQDQP---QDILVPQIENKPP 165
           GK++  VK P      +  P   + EEK  + V+SK ++QP   + ++  +I  K P
Sbjct: 117 GKVLQIVKEPEVVYEEKERPATVEEEEKKCIIVVSKSENQPPVEKPLVTARIGQKKP 173


>At5g49380.1 68418.m06111 hypothetical protein contains Pfam domain,
           PF04802: Protein of unknown function (DUF625)
          Length = 218

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 21/74 (28%), Positives = 32/74 (43%)
 Frame = -1

Query: 270 DRLSLPFVIIVDNVINNSLRVFLVLVFDEINFRFCRWFIFDLRHENILRLILFLRENVDY 91
           D L +     +D+VIN +    L L+ D+I   F R        E+   L+  L E    
Sbjct: 140 DVLDVATSAFLDSVINANKATVLTLLKDDIQESFARLRSPSTSDESRNNLVFPLHE---A 196

Query: 90  GLLFMLLWYRDNLW 49
            ++F+ LW   N W
Sbjct: 197 SIIFLRLWSFCNSW 210


>At5g46610.1 68418.m05738 hypothetical protein contains Pfam profile
           PF01027: Uncharacterized protein family UPF0005
          Length = 543

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 129 LRLILFLRENVDYGLLFMLLWY 64
           LR I ++++N DYG+L  LL +
Sbjct: 149 LRFIPYIKKNYDYGMLIFLLTF 170


>At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5)
           identical to HAC5 (GI:21105780) [Arabidopsis thaliana];
           similar to CREB-binding protein GB:S39162 from [Homo
           sapiens]
          Length = 1670

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 31  PSESRTPQVIPVPQQHEEKTIVYVLSKKQDQPQDILVPQIENKP 162
           P E +  Q     Q H+++ ++   + +Q QP   LV Q++N+P
Sbjct: 409 PLERQFNQQAHYGQYHQQELLMNNDAYRQSQPASNLVSQVKNEP 452


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.133    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,662,002
Number of Sequences: 28952
Number of extensions: 167126
Number of successful extensions: 453
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)