Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E01
         (418 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    27   1.2  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   2.7  
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    25   6.2  
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa...    25   6.2  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    24   8.2  

>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -3

Query: 251 INSYDLQTNEDVKIDTNLEQYPVLVHDLQFCVTLYLKIINTWPTWHQTIATKIVK 87
           ++ + L+ + D K+DT + Q   L+ DL   +  Y   +  W  WH     KI++
Sbjct: 147 LSRHKLKFSPD-KVDTMIVQAIALLDDLDKELNTYAMRVREWYGWHFPEMGKIIQ 200


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 169  RSCTNTGYCSKLVSILTSSFVCKSYEFIQKM 261
            R+C N+  CS  VS+L  + +   YE  ++M
Sbjct: 2573 RACGNSNVCSDCVSMLKDTNIKTCYECYRQM 2603


>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 397 PYLKCTSTMYHVDNYNLYV*IHYKIMKTKNPADTSKISLR 278
           P+    STM   D    Y    Y++M  KNPA  +++SLR
Sbjct: 257 PHFNAFSTMVKDD----YKKCGYQMMAWKNPALNARVSLR 292


>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 64  TNCDVYGSLTILVAIV*CH 120
           T CD+Y +LTI  A++ C+
Sbjct: 250 TLCDLYDTLTITQAVIFCN 268


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -1

Query: 379 STMYHVDNYNLYV*IHYKIMKT--KNPADTSKISLRKKKNKPFFV 251
           ST ++ D +N+   I  ++ +T  K PA   K+   +K N PFFV
Sbjct: 685 STQFY-DKFNIRFYI-CEVFRTIWKQPAYFGKLEQEQKTNLPFFV 727


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,603,653
Number of Sequences: 5004
Number of extensions: 30426
Number of successful extensions: 75
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)