Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E01
         (418 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0999 - 13105030-13105434,13105716-13105850,13105933-131061...    29   2.0  
03_02_0998 - 13097675-13098079,13098307-13098441,13098522-130987...    29   2.0  

>03_02_0999 -
           13105030-13105434,13105716-13105850,13105933-13106133,
           13106374-13106673,13106764-13106964,13107246-13107410,
           13107484-13107663,13108171-13108212,13108327-13108404
          Length = 568

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -3

Query: 251 INSYDLQTNEDVKIDTNLEQYPVLVHDLQFCVTLYLKIINTWPTWHQTIATKIV 90
           ++ Y L+ + + K+DT + Q   L+ DL   +  Y   +  W  WH    TKIV
Sbjct: 144 LSRYKLKFSPE-KVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIV 196


>03_02_0998 -
           13097675-13098079,13098307-13098441,13098522-13098722,
           13099060-13099359,13099449-13099649,13099932-13100096,
           13100170-13100349,13100896-13100937,13101040-13101117
          Length = 568

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -3

Query: 251 INSYDLQTNEDVKIDTNLEQYPVLVHDLQFCVTLYLKIINTWPTWHQTIATKIV 90
           ++ Y L+ + + K+DT + Q   L+ DL   +  Y   +  W  WH    TKIV
Sbjct: 144 LSRYKLKFSPE-KVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIV 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,047,485
Number of Sequences: 37544
Number of extensions: 149743
Number of successful extensions: 238
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)