Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_E01
         (418 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g36380.1 68414.m04519 expressed protein similar to vanilloid ...    29   0.95 
At5g27120.1 68418.m03237 SAR DNA-binding protein, putative stron...    28   2.9  
At3g05060.1 68416.m00549 SAR DNA-binding protein, putative stron...    27   3.8  
At1g51380.1 68414.m05780 eukaryotic translation initiation facto...    27   3.8  
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01...    26   8.9  

>At1g36380.1 68414.m04519 expressed protein similar to vanilloid
           receptor-like protein GB:AAD26363 from [Homo sapiens]
          Length = 84

 Score = 29.5 bits (63), Expect = 0.95
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 258 NGLFFFFLKEILLVSAGFFVFIIL*WIYTYKL*LS 362
           + LFFFFL   LL  +    FI L W   +KL LS
Sbjct: 9   DNLFFFFLIRPLLAISFVICFIALWWFLAWKLVLS 43


>At5g27120.1 68418.m03237 SAR DNA-binding protein, putative strong
           similarity to SAR DNA-binding protein-1 [Pisum sativum]
           GI:3132696; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 533

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -3

Query: 242 YDLQTNEDVKIDTNLEQYPVLVHDLQFCVTLYLKIINTWPTWHQTIATKIVK 87
           Y L+ + D K+DT + Q   L+ DL   +  Y   +  W  WH     KIV+
Sbjct: 147 YKLKFSSD-KVDTMIIQAIGLLDDLDKELNTYAMRVREWFGWHFPELAKIVQ 197


>At3g05060.1 68416.m00549 SAR DNA-binding protein, putative strong
           similarity to SAR DNA-binding protein-1 [Pisum sativum]
           GI:3132696; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 533

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -3

Query: 242 YDLQTNEDVKIDTNLEQYPVLVHDLQFCVTLYLKIINTWPTWHQTIATKIV 90
           Y L+ + D K+DT + Q   L+ DL   +  Y   +  W  WH     KI+
Sbjct: 148 YKLKFSSD-KVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKII 197


>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
           4A, putative / eIF-4A, putative
          Length = 392

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 64  TNCDVYGSLTILVAIV*CHVGQ 129
           T CD+YG LTI  AI+ C+  Q
Sbjct: 251 TLCDLYGRLTINQAIIFCNTRQ 272


>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM
           TIGR01612: reticulocyte binding protein; contains
           TIGRFAM TIGR00864: polycystin cation channel protein;
           similar to fimbriae-associated protein Fap1
           [Streptococcus parasanguinis] (GI:3929312)
          Length = 1498

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 11/40 (27%), Positives = 25/40 (62%)
 Frame = -3

Query: 239 DLQTNEDVKIDTNLEQYPVLVHDLQFCVTLYLKIINTWPT 120
           DL  ++D+K++ N+E++PV   +++    +  K+  T P+
Sbjct: 222 DLDVSQDLKLNENVEKHPVDSDEVRESELVSAKVSPTEPS 261


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,923,216
Number of Sequences: 28952
Number of extensions: 140071
Number of successful extensions: 225
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)