Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_D24
(435 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 46 3e-06
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 45 4e-06
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 44 1e-05
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 44 1e-05
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 41 9e-05
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 40 1e-04
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 40 2e-04
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 39 4e-04
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 38 7e-04
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 37 0.001
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 37 0.002
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 37 0.002
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.002
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 36 0.002
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 36 0.002
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 36 0.002
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 35 0.005
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 35 0.006
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 35 0.006
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 33 0.019
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 32 0.033
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 32 0.033
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 31 0.058
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 31 0.058
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 31 0.077
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 31 0.077
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 30 0.13
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 30 0.13
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 29 0.31
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 29 0.31
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 0.41
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 28 0.71
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 27 1.2
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 26 2.2
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 26 2.9
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 2.9
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 25 5.0
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 25 6.7
SPAC328.07c |||heavy metal ion homeostasis protein |Schizosaccha... 25 6.7
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 8.8
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 24 8.8
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 45.6 bits (103), Expect = 3e-06
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRG 232
KIY+ +L N + ++ + +G L + + +N GF F EF++P DAE AI G
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISG 370
Query: 233 LDGRTICGRRARVEMS 280
LDG+ G + + +
Sbjct: 371 LDGKDTYGNKLHAQFA 386
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 45.2 bits (102), Expect = 4e-06
Identities = 23/71 (32%), Positives = 37/71 (52%)
Frame = +2
Query: 62 DCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDG 241
+ +++VG + A++ ++ D F YG + + + GF FVE ED RDA D + G
Sbjct: 3 ETRLFVGRIPPQATREDMMDFFKGYGQILDCKLMN---GFGFVEVEDARDARDIVNDFQG 59
Query: 242 RTICGRRARVE 274
+ G R VE
Sbjct: 60 KEFMGSRIVVE 70
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 44.0 bits (99), Expect = 1e-05
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Frame = +2
Query: 65 CKIYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFEDPRDAEDAIR 229
C +YVG++ ++ ++ D F GP+++ + + P G+ F E+ DP A A+R
Sbjct: 5 CVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVR 64
Query: 230 GLDGRTICGRRARVE 274
L+ RR RV+
Sbjct: 65 NLNNYDAGTRRLRVD 79
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 44.0 bits (99), Expect = 1e-05
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPG----FAFVEFEDPRDAEDAIRGLD 238
++VG+L + ++ L +AF +G + +V + R +AFVEF++P DA++A+ ++
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
Query: 239 GRTICGRRARVEMSN 283
+C R RV +N
Sbjct: 68 YSILCDRCIRVSPAN 82
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 40.7 bits (91), Expect = 9e-05
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRGL 235
+++ L + + ++E F+ YGP+ + V RN G+AFV FE RD + A +
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161
Query: 236 DGRTICGRRARVEM 277
G + GRR V++
Sbjct: 162 AGLMLNGRRIVVDV 175
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 40.3 bits (90), Expect = 1e-04
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Frame = +2
Query: 62 DCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN---------PPGFAFVEFEDPRDA 214
D +++VG L + K E+ F G +R V + P G AFV F + D
Sbjct: 43 DFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDV 102
Query: 215 EDAIRGLDGRTICGRRARVE 274
+ AI L+G+T+ R V+
Sbjct: 103 DKAIETLNGKTLDDREIVVQ 122
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 39.5 bits (88), Expect = 2e-04
Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +2
Query: 47 MSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWV----ARNPPGFAFVEFEDPRDA 214
MSR +YV + EL F +GPL + R FAFVE+ED RDA
Sbjct: 1 MSRRSLRTLYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDA 60
Query: 215 EDAIRGLDGRTI 250
EDA + GR +
Sbjct: 61 EDAYYEVHGRRL 72
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 38.7 bits (86), Expect = 4e-04
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRGL 235
+YVG+L + ++ L + F+ GP+ ++ V R+ G+A+V F + D E A+ L
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 236 DGRTICGRRARVEMS 280
+ I GR R+ S
Sbjct: 142 NYTLIKGRPCRIMWS 156
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 37.9 bits (84), Expect = 7e-04
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFEDPRDAEDAIRG 232
++++ +L + ++ +L+ F +G L V + NP GFA+++F D DA A
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
Query: 233 LDGRTICGRRARV 271
LD + GR V
Sbjct: 384 LDAKPFQGRLLHV 396
Score = 30.7 bits (66), Expect = 0.10
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 176 GFAFVEFEDPRDAEDAIRGLDGRTICGRRARVEMSN 283
GF FVEF+D A A+ ++G + G + +++S+
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSH 701
Score = 24.2 bits (50), Expect = 8.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 179 FAFVEFEDPRDAEDAIRGLD 238
FAF+ F++ DA+ AIR L+
Sbjct: 48 FAFIGFKNEEDADKAIRYLN 67
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 37.1 bits (82), Expect = 0.001
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN----PPGFAFVEFEDPRDAEDAIRGL 235
+++VG+LGN+ + L AFS Y L V R+ GF FV F+D A R
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREK 90
Query: 236 DGRTICGRRARV 271
+G+ I R ++
Sbjct: 91 NGKYIGSRPVKL 102
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 36.7 bits (81), Expect = 0.002
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Frame = +2
Query: 65 CKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIR 229
C ++VG L N L F YG + V + G+ +V+FE P A+ A+
Sbjct: 263 CTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVA 322
Query: 230 GLDGRTICGRRARVEMSN 283
+ I GR +++SN
Sbjct: 323 ANGTKEIDGRMVNLDLSN 340
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 36.7 bits (81), Expect = 0.002
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = +2
Query: 62 DCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPG----FAFVEFEDPRDAEDAIR 229
DC IYVG+L S L D F+ G + +A P G F V+FE+ DA +I
Sbjct: 280 DC-IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIE 338
Query: 230 GLDGRTICGR 259
L+G GR
Sbjct: 339 KLNGYRYGGR 348
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 36.3 bits (80), Expect = 0.002
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRGL 235
++V +L + +L + FS GP+++ V NP G+ FV F DA+ A + L
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 236 DGRTICGRRARVEMS 280
+ + GR R++ +
Sbjct: 67 KNKKLHGRILRLDFA 81
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 36.3 bits (80), Expect = 0.002
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Frame = +2
Query: 71 IYVGDLGNNASKPEL----EDAFSYYGPLRNVWVARN--PPGFAFVEFEDPRDAEDAIRG 232
++V L ++ S+ EL +D F +GPL +V V ++ ++FV+F++ DA A+
Sbjct: 81 LFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKDWLQRPYSFVQFQNTDDASKALSE 140
Query: 233 LDGRTICGRRARVE 274
+ GR R+E
Sbjct: 141 AQNTILDGRHIRIE 154
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 36.3 bits (80), Expect = 0.002
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Frame = +2
Query: 62 DCKIYVGDLGNNASKPELEDAFSYYGPLRNVWV----------ARNPPGFAFVEFEDPRD 211
+ IYVG+L + +L + F +G + +++P FAF+ FE+
Sbjct: 19 EISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCS 78
Query: 212 AEDAIRGLDGRTICGRRARVEMSN 283
A++AI L+G + G +VE ++
Sbjct: 79 ADNAIASLNGSSFQGNTLKVEYTH 102
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 36.3 bits (80), Expect = 0.002
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRGL 235
++VG++ + S+ ++ + F+ GP++ + +P G+ F EF D A+R L
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 236 DGRTICGRRARVE 274
+ + R+ RVE
Sbjct: 69 NNSELGPRKIRVE 81
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 35.1 bits (77), Expect = 0.005
Identities = 19/76 (25%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVA-----RNPPGFAFVEFEDPRDAEDAIRGL 235
+YVG+L ++ ++ FS G +R + + + P GF FVE+ + +DA D+++ +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 236 DGRTICGRRARVEMSN 283
++ R R ++ +
Sbjct: 94 SRTSLDERIIRADLDH 109
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 34.7 bits (76), Expect = 0.006
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 176 GFAFVEFEDPRDAEDAIRGLDGRTICGRRARVE 274
G AF F P +A+ ++ L+G I GRR RVE
Sbjct: 274 GLAFANFHSPEEAKTVVQVLNGYEITGRRLRVE 306
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 34.7 bits (76), Expect = 0.006
Identities = 16/55 (29%), Positives = 33/55 (60%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGL 235
+++G+L ++ + E+E+AF +G + ++ + + AFV F + RDA +R L
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKIL-SKKNIAFVHFLNIRDAIKVVRTL 354
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 33.1 bits (72), Expect = 0.019
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFEDPRDAEDAIRGL 235
+YVG++ + + EL+ F+ G + V + +P GFA++EF +P +A+ L
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALL-L 115
Query: 236 DGRTICGRRARV 271
+G + R +V
Sbjct: 116 NGSMLHERPLKV 127
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 32.3 bits (70), Expect = 0.033
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +2
Query: 116 EDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTICGRRARVEM 277
E+ YG + ++ V N G FV+FE+ AE AI GL R GR + +
Sbjct: 535 EECDEKYGKVVHIAVVPNELGQIFVKFENADFAEKAITGLHQRWFGGRTIKASI 588
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 32.3 bits (70), Expect = 0.033
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 176 GFAFVEFEDPRDAEDAIRGLDGRTICGRRARVE 274
G AF F P +A+ ++ L+G I GRR RVE
Sbjct: 244 GLAFANFYRPEEAQVVVQTLNGYEINGRRLRVE 276
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 31.5 bits (68), Expect = 0.058
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRGL 235
IY+G+L + ++ ++ FS +G ++ + R+ GFAF+++ED R A+ +
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 236 DGRTICGRRARVE 274
+ R RV+
Sbjct: 93 TNVKLLDRLVRVD 105
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 31.5 bits (68), Expect = 0.058
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Frame = +2
Query: 53 RYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVAR-----NPPGFAFVEFEDPRDAE 217
R D IY+G+L + L + GP+ N+ + R + GF F EF +D E
Sbjct: 7 RNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVE 66
Query: 218 DAIRGLDGRTICGRRARVEMSN 283
A + L+ + G+ RV ++
Sbjct: 67 YACQILNQVKLFGKPIRVNRAS 88
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 31.1 bits (67), Expect = 0.077
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY+CG+ GH AR+C
Sbjct: 19 CYNCGENGHQAREC 32
Score = 29.9 bits (64), Expect = 0.18
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY CG GH ARDC
Sbjct: 118 CYACGSYGHQARDC 131
Score = 29.1 bits (62), Expect = 0.31
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY CG GH ARDC
Sbjct: 85 CYKCGRVGHIARDC 98
Score = 28.3 bits (60), Expect = 0.54
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY CG GH RDC
Sbjct: 60 CYACGTAGHLVRDC 73
Score = 24.6 bits (51), Expect = 6.7
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY+C GH A +C
Sbjct: 38 CYNCNQTGHKASEC 51
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 31.1 bits (67), Expect = 0.077
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFS-YYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDG 241
IYVG+L + S+ EL+ FS G R + + FVEFE+ A +A++ L G
Sbjct: 428 IYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCFVEFENIPYAMEALKNLQG 485
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 30.3 bits (65), Expect = 0.13
Identities = 22/69 (31%), Positives = 29/69 (42%)
Frame = +2
Query: 77 VGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTICG 256
V ++ ++ L F YG L V + G A VEF D DA A L+G I G
Sbjct: 878 VTNVDGTVNEARLRSLFESYGKLYRVVLHPEHEG-AVVEFLDIHDAGKASLALEGHEIGG 936
Query: 257 RRARVEMSN 283
R + N
Sbjct: 937 RLLHITTVN 945
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 30.3 bits (65), Expect = 0.13
Identities = 18/69 (26%), Positives = 31/69 (44%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 250
+YV +L S + FS YG ++++W+ +P A V +E A A L R +
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWML-SPDNSAIVSYESLSSAIVARDALHNRPV 60
Query: 251 CGRRARVEM 277
V++
Sbjct: 61 FENHGPVQV 69
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 29.1 bits (62), Expect = 0.31
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRGL 235
++VG+L A + L F G + V + R+P GFA+++F+D + A+
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLN 331
Query: 236 DGRTICGRRARV 271
+ + GR R+
Sbjct: 332 EKKMPEGRTLRI 343
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 29.1 bits (62), Expect = 0.31
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVW--VARNPPGFAFVEFEDPRDAEDAIRGLDGR 244
IYVG+L N + +L AFS R + + N P FVEFE+ A A+ + G
Sbjct: 604 IYVGNLSNPDQEKKLRLAFSKEKGYRRLCFKIKGNSP-MCFVEFEEVCHAAKAMEKMQGA 662
Query: 245 TI 250
+
Sbjct: 663 AL 664
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 28.7 bits (61), Expect = 0.41
Identities = 15/60 (25%), Positives = 31/60 (51%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 250
++VG+L + S + FS YG + ++ + + AF+ F+ A+ + L+G+ I
Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHS-AFLNFDSVETAKHVLEELNGKRI 647
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 27.9 bits (59), Expect = 0.71
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFE 199
+YVG L + + ++ FS +GP+ + ++RN +AF+EFE
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFE 154
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 27.1 bits (57), Expect = 1.2
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 89 GNNASKPELEDAFSYYGPLRNVWVARNPPGFAFV-EFEDPRDAEDAIRGLDGRTI 250
G+ S +L+ +GPL + R+ + EF D RDA A+ LDGR I
Sbjct: 300 GSVLSILQLQSILQTFGPLLIMKPLRSQNVSQIICEFYDTRDASFALDELDGRII 354
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 26.2 bits (55), Expect = 2.2
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
C CG GH ARDC
Sbjct: 336 CRHCGSIGHIARDC 349
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 25.8 bits (54), Expect = 2.9
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY CG +GH+ + C
Sbjct: 185 CYRCGQKGHWIQAC 198
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 25.8 bits (54), Expect = 2.9
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAI 226
I V + A++ ++ED F+ +GP++N+ + + G+A +E+ A+ A+
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAV 68
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 25.0 bits (52), Expect = 5.0
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVW 157
IYVG++ + S E+ FS YG + +++
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESIF 47
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 24.6 bits (51), Expect = 6.7
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -3
Query: 178 TGWISGHPYISQRTIVRKCIFKFWLAGVVSQI 83
T IS + R+++RKCI + L +V+++
Sbjct: 1607 TSSISPEKQMEFRSMIRKCILQLLLISIVAEL 1638
>SPAC328.07c |||heavy metal ion homeostasis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 277
Score = 24.6 bits (51), Expect = 6.7
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -2
Query: 365 NHSSGHHMDVVVAETAAE 312
NH+ GHH+D V + +A+
Sbjct: 90 NHADGHHVDSVFSNLSAK 107
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 24.2 bits (50), Expect = 8.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 149 FSKDHSKKMHLQVLACWRCFP 87
F+KD SKK L L +R FP
Sbjct: 22 FTKDFSKKDKLTALDTYRSFP 42
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 24.2 bits (50), Expect = 8.8
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPR 208
++VG+L ++S L+ F G + +V + + G+AFVEF +P+
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPK 144
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,676,598
Number of Sequences: 5004
Number of extensions: 31167
Number of successful extensions: 157
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -