Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_D24
(435 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 126 6e-30
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 123 6e-29
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 104 4e-23
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 74 4e-14
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 55 2e-08
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 52 3e-07
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 3e-07
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 49 1e-06
SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 6e-06
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 1e-05
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 2e-05
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 45 2e-05
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 44 5e-05
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 44 7e-05
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 43 9e-05
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 9e-05
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 2e-04
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 9e-04
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 39 0.002
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.002
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.003
SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 38 0.005
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28) 37 0.006
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 37 0.008
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.008
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 37 0.008
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 36 0.011
SB_16234| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.033
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.058
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.058
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 34 0.058
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 33 0.077
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.077
SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.13
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.13
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 32 0.18
SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) 32 0.23
SB_34761| Best HMM Match : zf-CCHC (HMM E-Value=4.9e-08) 32 0.23
SB_55324| Best HMM Match : zf-CCHC (HMM E-Value=0.00014) 31 0.31
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.31
SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.31
SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.31
SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035) 31 0.31
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.54
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 31 0.54
SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07) 31 0.54
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.54
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.72
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 30 0.72
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.72
SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.95
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.95
SB_32274| Best HMM Match : RRM_1 (HMM E-Value=0.0026) 30 0.95
SB_1325| Best HMM Match : PTSIIA_gutA (HMM E-Value=8.3) 29 1.3
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 29 1.3
SB_1040| Best HMM Match : RRM_1 (HMM E-Value=1e-05) 29 1.3
SB_27592| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-39) 29 1.3
SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19) 29 1.7
SB_47578| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13) 29 1.7
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 29 1.7
SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_34470| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0) 29 2.2
SB_10860| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_20265| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_9084| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_56406| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_45173| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_56032| Best HMM Match : zf-CCHC (HMM E-Value=0.00047) 28 3.8
SB_35375| Best HMM Match : RVT_1 (HMM E-Value=0.00074) 28 3.8
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 28 3.8
SB_7499| Best HMM Match : zf-CCHC (HMM E-Value=0.00029) 27 5.0
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24) 27 5.0
SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_22052| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_53824| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_41121| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05) 27 6.7
SB_34988| Best HMM Match : zf-CCHC (HMM E-Value=3e-12) 27 6.7
SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05) 27 6.7
SB_29554| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_15066| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05) 27 6.7
SB_14798| Best HMM Match : zf-CCHC (HMM E-Value=0.00014) 27 6.7
SB_4685| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_3642| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05) 27 6.7
SB_3304| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05) 27 6.7
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_36113| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05) 27 6.7
SB_32933| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05) 27 6.7
SB_23479| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_15517| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05) 27 6.7
SB_5379| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05) 27 6.7
SB_4252| Best HMM Match : zf-CCHC (HMM E-Value=0.00032) 27 6.7
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 27 8.8
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_13196| Best HMM Match : VSP (HMM E-Value=1.4) 27 8.8
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 126 bits (305), Expect = 6e-30
Identities = 59/110 (53%), Positives = 73/110 (66%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRT 247
K+Y+G LG+NASK E+E+ F YYGPL++VWVARNPPGFAF F+D RDAEDA+R LDGR
Sbjct: 33 KVYIGSLGDNASKREIENEFGYYGPLKDVWVARNPPGFAFCIFDDRRDAEDAVRELDGRY 92
Query: 248 ICGRRARVEMSNXXXXXXXXXXXXXXXXXXXXXXXXCYDCGDRGHYARDC 397
ICG+R RVE++ CY+CG GH+ARDC
Sbjct: 93 ICGQRVRVELAK----------GPSRGRPRMGSNEKCYECGRVGHFARDC 132
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 123 bits (297), Expect = 6e-29
Identities = 58/110 (52%), Positives = 73/110 (66%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRT 247
++Y+G++G+NASK E+E F +GPLR+VWVARNPPGFAF FED RDAEDA+R LDGR
Sbjct: 3 RVYIGNIGDNASKREIEREFETFGPLRDVWVARNPPGFAFCVFEDRRDAEDAVRELDGRY 62
Query: 248 ICGRRARVEMSNXXXXXXXXXXXXXXXXXXXXXXXXCYDCGDRGHYARDC 397
ICG+RARVE++ CY+CG GH+ARDC
Sbjct: 63 ICGQRARVELAK----------GPSRGRPRQASNEKCYECGRVGHFARDC 102
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 104 bits (249), Expect = 4e-23
Identities = 47/72 (65%), Positives = 54/72 (75%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRT 247
K+YVG+LG NA ELE AF +G L VWVARNPPGFAFVE+ED RDAE+A+R LDG
Sbjct: 5 KLYVGNLGRNADSSELERAFEKFGRLSKVWVARNPPGFAFVEYEDYRDAEEAVRELDGAN 64
Query: 248 ICGRRARVEMSN 283
+C R RVE SN
Sbjct: 65 VCDRTIRVEFSN 76
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 74.1 bits (174), Expect = 4e-14
Identities = 37/78 (47%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Frame = +2
Query: 50 SRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP---PGFAFVEFEDPRDAED 220
S DC++YVG+L + + +L D F YG + +V + P FAFVEFEDPRDAED
Sbjct: 256 SNSNDCRVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPPFAFVEFEDPRDAED 315
Query: 221 AIRGLDGRTICGRRARVE 274
A++G DG G R RVE
Sbjct: 316 AVKGRDGHEFDGYRIRVE 333
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 55.2 bits (127), Expect = 2e-08
Identities = 27/73 (36%), Positives = 44/73 (60%)
Frame = +2
Query: 62 DCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDG 241
+C++Y+G L ++ ++ F YG LR++ + N + FVEFED RDA+DA+ +G
Sbjct: 2 NCRVYLGRLPYGTTEDDVRRFFRSYGRLRDINLKNN---YGFVEFEDDRDADDAVYECNG 58
Query: 242 RTICGRRARVEMS 280
+ + G R VE S
Sbjct: 59 KEMLGERILVEHS 71
Score = 30.7 bits (66), Expect = 0.54
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRT 247
++ + +L + S +L+D G + + G +EF RD + A++ LDG
Sbjct: 98 RMTIENLSSRVSWQDLKDFCRQVGDVTYGDAHKQRQGEGVIEFSCKRDLKRALKKLDGEE 157
Query: 248 ICGRRARV 271
+ G+R R+
Sbjct: 158 LNGKRIRL 165
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 51.6 bits (118), Expect = 3e-07
Identities = 26/65 (40%), Positives = 39/65 (60%)
Frame = +2
Query: 86 LGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTICGRRA 265
L + + ++E YG +R++ + R G+ FVEF+D RDAEDA+ L+GR + G R
Sbjct: 696 LPRDVRESDVEKFLRGYGKIRDISLKR---GYGFVEFDDHRDAEDAVHDLNGRDLIGERV 752
Query: 266 RVEMS 280
VE S
Sbjct: 753 VVEFS 757
Score = 37.9 bits (84), Expect = 0.004
Identities = 23/67 (34%), Positives = 31/67 (46%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 250
+ V +L + S +L+D F YG + + G VEFE D AI LD +
Sbjct: 800 VIVENLSSRTSWQDLKDYFRKYGKVTYADAHKKRIGEGVVEFESKDDLNTAIEKLDDTEL 859
Query: 251 CGRRARV 271
GRR RV
Sbjct: 860 GGRRIRV 866
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 51.6 bits (118), Expect = 3e-07
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Frame = +2
Query: 62 DCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVA----RNPPGFAFVEFEDPRDAEDAIR 229
+CK Y+G+L ++ +L+D FS Y + ++ + P GFAFV F ++ EDAI
Sbjct: 229 ECKCYIGNLDFKVNEADLQDRFSRYDVVDVQVISDRETQRPRGFAFVTFGSKKNMEDAIN 288
Query: 230 GLDGRTICGRRARVEMS 280
LDG+ GR +V +
Sbjct: 289 ELDGQEFDGRSMKVNQA 305
Score = 27.1 bits (57), Expect = 6.7
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 170 PPGFAFVEFEDPRDAEDAIRGLDGRTICGRRARV 271
P GF FV F + + AI DG + GR +V
Sbjct: 49 PRGFGFVTFGSEDEMDKAIDKFDGEDLDGRPMKV 82
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 49.2 bits (112), Expect = 1e-06
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRG 232
K+YV L N +K +++ FS YG ++ V + + GFA+VE+ DP + E A++
Sbjct: 1158 KLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEKALKH 1217
Query: 233 LDGRTICGRRARVE 274
+DG I G+ V+
Sbjct: 1218 MDGGQIDGQEIAVQ 1231
>SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 47.2 bits (107), Expect = 6e-06
Identities = 25/69 (36%), Positives = 38/69 (55%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRT 247
+++VG L +LE+ F YG L + + F+E+EDPRDAE+A+R + R
Sbjct: 7 QLFVGRLSKETKLRDLENVFYLYGKLLRCDLKT---AYGFIEYEDPRDAEEAMRRENNRK 63
Query: 248 ICGRRARVE 274
+ G R VE
Sbjct: 64 LFGSRIVVE 72
>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 46.4 bits (105), Expect = 1e-05
Identities = 23/65 (35%), Positives = 37/65 (56%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRT 247
++Y G L + + +LE YG +R + + G+ FVEF+D RDA+D + L+GR
Sbjct: 6 RVYFGRLPRDCRERDLEKFVRGYGRVREISMKL---GYGFVEFDDYRDADDCVYDLNGRN 62
Query: 248 ICGRR 262
+ G R
Sbjct: 63 LLGER 67
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 45.2 bits (102), Expect = 2e-05
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN----PPGFAFVEFEDPRDAEDAIRGLD 238
++V +L +A + E+E+ FS +G ++ V + N P G+ +VE+E A A+ LD
Sbjct: 173 LFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAVLTLD 232
Query: 239 GRTICGRRARVEMSN 283
+ GR V +SN
Sbjct: 233 KTEVKGRTISVALSN 247
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 45.2 bits (102), Expect = 2e-05
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Frame = +2
Query: 65 CKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAFVEFEDPRDAEDAIR 229
C++YVG + + + AF +GP+ + ++ +P GFAFVE++ P A+ A+
Sbjct: 102 CRVYVGSINFELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQLALE 161
Query: 230 GLDGRTICGRRARV 271
++G + GR +V
Sbjct: 162 QMNGVLLGGRNIKV 175
Score = 31.9 bits (69), Expect = 0.23
Identities = 16/73 (21%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAFVEFEDPRDAEDAIRG 232
+IY+ + + + +++ F +G + + +++ P G+ F+E+E+ + A DAI
Sbjct: 200 RIYIASVHPDLLEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIAS 259
Query: 233 LDGRTICGRRARV 271
++ + G+ RV
Sbjct: 260 MNLFDLGGQFLRV 272
Score = 30.7 bits (66), Expect = 0.54
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 185 FVEFEDPRDAEDAIRGLDGRTICGRRARVEMSN 283
FVEF P + + A LDGR GR + E N
Sbjct: 550 FVEFTSPDETDKATSNLDGRWFGGRAVKAEAYN 582
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 44.0 bits (99), Expect = 5e-05
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPG----FAFVEFEDPRDAEDAIRGLD 238
+YV + G++ ++++ + G + ++ V +P G F FV FE P +AE+A+ L+
Sbjct: 111 VYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNVLN 170
Query: 239 GRTICGRR 262
G+ I GRR
Sbjct: 171 GKEIGGRR 178
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +2
Query: 47 MSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVAR----NPPGFAFVEFEDPRDA 214
++R+ +Y+ +L + L + FS YG + + V + N GF FV F P +A
Sbjct: 206 INRFQGVNLYIKNLDDPIDDERLREEFSPYGTISSAKVMKDDKGNSKGFGFVCFSSPEEA 265
Query: 215 EDAIRGLDGRTICGRRARVEMS 280
A+ ++GR + + V ++
Sbjct: 266 TKAVTEMNGRILISKPLYVALA 287
Score = 33.9 bits (74), Expect = 0.058
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Frame = +2
Query: 50 SRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNV-----WVARNPPGFAFVEFEDP-RD 211
+ Y +YVGDL + ++ L + FS G + ++ V R G+A+V F+ P D
Sbjct: 8 ANYPIASLYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTRRSLGYAYVNFQQPGHD 67
Query: 212 AE-DAIRGLDGRTICGRRARV 271
A +AI +DG + ++ V
Sbjct: 68 AALEAIARVDGMLLNDKKVFV 88
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 43.6 bits (98), Expect = 7e-05
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPL---RNVW--VARNPPGFAFVEFEDPRDAEDAIRGL 235
++VG++ AS+ +L++ FS GP+ R V+ P G+ F E++D A A+R L
Sbjct: 27 VFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRNL 86
Query: 236 DGRTICGRRARVE 274
+G + GR RV+
Sbjct: 87 NGYELNGRALRVD 99
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 43.2 bits (97), Expect = 9e-05
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +2
Query: 65 CKIYVGDLGNNA-SKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDG 241
C+I++G+L + ++ +LE+ FS +G + + N F FV+FE + A++A+ G
Sbjct: 46 CRIFIGNLATDKIARQDLEEIFSRHGKVLGCSLHAN---FGFVQFETEKGADEAVAKEHG 102
Query: 242 RTICGRRARVEMSN 283
R I G++ V + N
Sbjct: 103 RIINGKKIDVRIVN 116
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 43.2 bits (97), Expect = 9e-05
Identities = 24/74 (32%), Positives = 40/74 (54%)
Frame = +2
Query: 59 GDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLD 238
G C+++VG+L + + E+++ F YG + V++ + GF F+ + AE A GLD
Sbjct: 51 GRCRLFVGNL-IDCDEEEMKEMFKKYGEVAEVFINKEK-GFGFIRLDTRLHAEAAKAGLD 108
Query: 239 GRTICGRRARVEMS 280
T GR RV +
Sbjct: 109 MATRKGRTLRVRFA 122
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 41.9 bits (94), Expect = 2e-04
Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRGL 235
+YVG+L + + +L F YG + V + R+ G AF+ F D + A++A+ +
Sbjct: 12 VYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQNAVAAV 71
Query: 236 DGRTICGRRARVEMSNXXXXXXXXXXXXXXXXXXXXXXXXCYDCGDRGHYARDC 397
+ + + GR + ++ CY+CG+ GH + +C
Sbjct: 72 NKKQMFGRTIKCTIAK-----DNGRAPEFIRRRDYPDKSRCYECGEGGHLSYEC 120
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 39.9 bits (89), Expect = 9e-04
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Frame = +2
Query: 92 NNASKPE--LEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTICGRRA 265
N A P+ L+D FS +G L +VW+ + F + +F + A+ AI+GL G + G +
Sbjct: 345 NPAPPPDHVLKDVFSRFGNLIDVWMMKE-RNFGYAKFAAKQSADAAIQGLHGHDVLGMKL 403
Query: 266 RVE 274
+++
Sbjct: 404 KID 406
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 39.1 bits (87), Expect = 0.002
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Frame = +2
Query: 44 IMSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPR 208
I R D IYVG L S+ + + F GP+ NV + ++ G+ FVEF
Sbjct: 6 IAERNQDATIYVGGLDEKVSEALIWELFLQSGPVVNVHMPKDRITQLHQGYGFVEFLGEE 65
Query: 209 DAEDAIRGLDGRTICGRRARVEMSN 283
DA+ AI+ ++ + G+ RV ++
Sbjct: 66 DADYAIKVMNMIKVYGKPIRVNKAS 90
Score = 33.9 bits (74), Expect = 0.058
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGP-LRNVWVAR-----NPPGFAFVEFEDPRDAEDAIRG 232
+++G+L + L D FS +G L+ + R N GFAF+ F ++ AI
Sbjct: 102 LFIGNLDTEVDEKLLYDTFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASDAAIEA 161
Query: 233 LDGRTICGR 259
++G+ +C R
Sbjct: 162 MNGQYLCNR 170
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +2
Query: 59 GDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDA 223
G + V +L + +L+ F YG L ++++ R+ GFAFV F + RDAEDA
Sbjct: 14 GMTSLKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYEKRDAEDA 73
Query: 224 IRGLDGRTICGRR 262
+ +D + +
Sbjct: 74 MDCMDATCLMAEK 86
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 38.3 bits (85), Expect = 0.003
Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAFVEFEDPRDAEDAIRGL 235
++V ++ A + ++ + FS YG ++N+ V + G+A VE+E ++A+ A+ L
Sbjct: 295 LFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEAL 354
Query: 236 DGRTICGRRARVE 274
+G + G+ V+
Sbjct: 355 NGAEMLGQNISVD 367
>SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 37.9 bits (84), Expect = 0.004
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +2
Query: 161 ARNPPGFAFVEFEDPRDAEDAIRGLDGRTICGRRARVEM 277
A P G+AF+E+E RD A + DG+ I GRR V++
Sbjct: 43 ASKPRGYAFIEYEHERDMHAAYKHADGKKIDGRRIVVDV 81
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 37.5 bits (83), Expect = 0.005
Identities = 24/68 (35%), Positives = 35/68 (51%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 250
I+VG + N+ S+ ++E F YG + V + R A V F+ A A + GRT+
Sbjct: 330 IWVGGVTNSLSEQQVERHFGRYGRVTKVVINR-VTNQALVSFDSVDSATIAHAQMKGRTM 388
Query: 251 CGRRARVE 274
RR RVE
Sbjct: 389 FSRRVRVE 396
Score = 35.1 bits (77), Expect = 0.025
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPG--FAFVEFEDPRDAEDAIRGLDGR 244
++VG++ + +L++AF YG + +V + + P +AFV+F + A A R +D
Sbjct: 251 LFVGNIEKTTTYGDLKEAFERYGEVIDVDIKKQPGNNPYAFVQFAELSSAIQARRKMDRE 310
Query: 245 TICGRRARV 271
+ R +V
Sbjct: 311 YVGRNRVKV 319
>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
Length = 440
Score = 37.1 bits (82), Expect = 0.006
Identities = 20/69 (28%), Positives = 37/69 (53%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRT 247
K+Y G L A++ +LE+ +G +R V G+A+V F++ +DA+ A+ L+
Sbjct: 4 KVYCGRLPATATEKDLENLVKVFGKVREVDFKE---GYAYVVFKENKDADRAVAALNNSE 60
Query: 248 ICGRRARVE 274
G + +E
Sbjct: 61 FHGAKILME 69
Score = 30.7 bits (66), Expect = 0.54
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRT 247
++ V +L A EL++ + G + R PG VEF D + AI LD
Sbjct: 103 RVIVENLSTRAKWLELKEFMNNAGEVCYADTHRRRPGEGVVEFTTEEDMKRAIASLDKCE 162
Query: 248 ICGRRARV 271
G+R R+
Sbjct: 163 FYGKRIRL 170
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 36.7 bits (81), Expect = 0.008
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAI 226
K++VG L +K L++ FS YG L V + + P GFAFV+F+ +A DAI
Sbjct: 30 KLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQFKHQSEA-DAI 86
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 36.7 bits (81), Expect = 0.008
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 176 GFAFVEFEDPRDAEDAIRGLDGRTICGRRARVEMS 280
GF FV F +P DA+ A++ L+G+ + GR ++ S
Sbjct: 100 GFGFVTFANPEDAQTAVKSLNGKEVQGRTLKIAPS 134
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 36.7 bits (81), Expect = 0.008
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Frame = +2
Query: 62 DCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAI 226
D +I+ GDLG+ + L AF+ Y + R+ G+ FV F+DP D A+
Sbjct: 216 DFRIFCGDLGSEVTDESLTRAFAKYTSFLKAKIVRDKKSNKSKGYGFVSFKDPNDFIKAM 275
Query: 227 RGLD 238
R ++
Sbjct: 276 REMN 279
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 36.3 bits (80), Expect = 0.011
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Frame = +2
Query: 74 YVGDLGNNASKPELEDAFSYYGPLRNV-----WVARNPPGFAFVEFEDPRDAEDAIRGLD 238
YVG L + L AF +G + +V + GF FVEFE D AI ++
Sbjct: 8 YVGGLAEEVDEKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMN 67
Query: 239 GRTICGRRARVEMS 280
+ GR RV ++
Sbjct: 68 ESELFGRTIRVNLA 81
>SB_16234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1150
Score = 34.7 bits (76), Expect = 0.033
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CYDCG+ GH+AR+C
Sbjct: 627 CYDCGEEGHFAREC 640
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 33.9 bits (74), Expect = 0.058
Identities = 21/72 (29%), Positives = 37/72 (51%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRT 247
+++VG LG S PELE F +G +R + R A++ ++ A A R + G
Sbjct: 319 RLWVGGLGPWISIPELEREFDRFGAIRRI-DYRKGGDHAYILYDSLDAASVAAREMRGFQ 377
Query: 248 ICGRRARVEMSN 283
+ RR R++ ++
Sbjct: 378 MGDRRLRIDFAD 389
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 33.9 bits (74), Expect = 0.058
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRG 232
K+Y+G+L N+ + E+E AF +G + V + R+ GF FV + AI
Sbjct: 10 KLYIGNLNFNSDEGEIEQAFEEFG-VEKVDILRDKESGRSRGFGFVLLQSADQIAPAIEK 68
Query: 233 LDGRTICGRRARVEMS 280
++ ++ GR V ++
Sbjct: 69 MNQSSVGGRNITVALA 84
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 33.9 bits (74), Expect = 0.058
Identities = 18/63 (28%), Positives = 33/63 (52%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRT 247
++Y+G L + +++ F YG + + G+ FVEF+ DAEDA+ +G+
Sbjct: 4 RVYLGRLPYGTREDDVKKFFYTYGRFKIREIILKD-GYGFVEFDYSDDAEDAVYECNGKK 62
Query: 248 ICG 256
+ G
Sbjct: 63 MLG 65
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 33.5 bits (73), Expect = 0.077
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVAR----NPPGFAFVEFEDPRDAEDAIRG-- 232
IY+ D + K LE F YG + ++ + R GF +V +E+ A+ A+ G
Sbjct: 65 IYIRDFRPDIRKSSLESVFGPYGAIEDLSIIRTQTGKSKGFGYVTYENAESAQRALAGTH 124
Query: 233 -LDGRTI 250
+DG+ +
Sbjct: 125 IIDGKWV 131
>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 33.5 bits (73), Expect = 0.077
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 170 PPGFAFVEFEDPRDAEDAIRGLDGRTICGRRARVEMSN 283
P G+ FVEF+ DA A+RGL+ + + R V+ ++
Sbjct: 430 PRGYCFVEFKKKEDARKALRGLNKKIVLSRALVVDWAH 467
>SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 32.7 bits (71), Expect = 0.13
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDA----FSYYGPLRNVWVARNPP--GFAFVEFEDPRDAEDAIRG 232
IY+ +L K EL+ + FS +GP+ ++ + G AFV F+D A +A+R
Sbjct: 9 IYIKNLNEKIKKEELKKSLYAIFSQFGPILDIVALKTLKMRGQAFVVFKDIGSATNALRS 68
Query: 233 LDGRTICGRRARVE 274
+ G + R++
Sbjct: 69 MQGFPFYDKPMRIQ 82
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 32.7 bits (71), Expect = 0.13
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYG-------PLRNVWVARNPPGFAFVEFEDPRDAEDAI 226
++ + +L N ++ L++ FS +G P + V GF FV+F + DA A+
Sbjct: 248 RLIIRNLAFNCTEAILKETFSAFGEVSEASVPQKKVGRRNRKMGFGFVQFTNVFDAAKAL 307
Query: 227 RGLDGRTICGRRARVE 274
++ + I GR V+
Sbjct: 308 EEMNAKKILGRPVAVD 323
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 32.3 bits (70), Expect = 0.18
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Frame = +2
Query: 62 DCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPG-----FAFVEFEDPRDAEDAI 226
D ++V L + +LE FS +G + + V R+ +AF+EFE D E A
Sbjct: 119 DNVLFVCKLNPVTTDEDLEIIFSRFGTILSCEVIRDQKTGESLQYAFIEFEKDEDCERAY 178
Query: 227 RGLDGRTICGRRARVEMS 280
+D I RR V+ S
Sbjct: 179 FKMDNVLIDDRRIHVDFS 196
>SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16)
Length = 76
Score = 31.9 bits (69), Expect = 0.23
Identities = 21/70 (30%), Positives = 35/70 (50%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 250
IYV ++ S+ +L+ F+ YG + V R+ + FV F A AI G++G I
Sbjct: 4 IYVRNVPLPMSETQLKAVFTKYGQIEKVRKIRD---YGFVYFAKRESAVQAIDGINGAYI 60
Query: 251 CGRRARVEMS 280
G + V ++
Sbjct: 61 DGCKLEVSLA 70
>SB_34761| Best HMM Match : zf-CCHC (HMM E-Value=4.9e-08)
Length = 59
Score = 31.9 bits (69), Expect = 0.23
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY CG GH+ARDC
Sbjct: 10 CYKCGKTGHFARDC 23
>SB_55324| Best HMM Match : zf-CCHC (HMM E-Value=0.00014)
Length = 344
Score = 31.5 bits (68), Expect = 0.31
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CYDCG+ H+AR+C
Sbjct: 299 CYDCGEERHFAREC 312
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 31.5 bits (68), Expect = 0.31
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +2
Query: 113 LEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRGLDGRTICGRRARV 271
+++ FS G + VA NP GFAFV++ +AE R +GR + G RV
Sbjct: 222 IKELFSQTGNVTFAQVAINPANGGSRGFAFVDYATAEEAEKGQRAHNGRQVEGSNIRV 279
>SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 31.5 bits (68), Expect = 0.31
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY CG GH+ARDC
Sbjct: 123 CYRCGKSGHFARDC 136
Score = 31.1 bits (67), Expect = 0.41
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY CGD H ARDC
Sbjct: 99 CYTCGDESHIARDC 112
Score = 30.7 bits (66), Expect = 0.54
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY CG +GH +RDC
Sbjct: 28 CYSCGKKGHISRDC 41
Score = 29.5 bits (63), Expect = 1.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY C + GH+ARDC
Sbjct: 78 CYRCQETGHFARDC 91
Score = 29.1 bits (62), Expect = 1.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY CG+ GH RDC
Sbjct: 142 CYKCGNTGHIRRDC 155
Score = 28.3 bits (60), Expect = 2.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY C GH+ARDC
Sbjct: 56 CYRCNMSGHFARDC 69
>SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 31.5 bits (68), Expect = 0.31
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 65 CKIYVGDLGNNASKPELEDAFSYYG 139
CK++VG++G EL+D F Y+G
Sbjct: 79 CKVFVGNIGFKVRARELKDFFGYFG 103
>SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)
Length = 258
Score = 31.5 bits (68), Expect = 0.31
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +2
Query: 176 GFAFVEFEDPRDAEDAIRGLDGRTICGRRARV 271
GF FV E+ D ED R DG GRR +V
Sbjct: 84 GFGFVTLENQEDLEDVTRKFDGFEYEGRRLKV 115
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 30.7 bits (66), Expect = 0.54
Identities = 17/70 (24%), Positives = 37/70 (52%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 250
+Y+ +L + ++ +L++ +S YG + V ++ +AFV F + A AI DG+ +
Sbjct: 331 VYLRNLSPSITEEKLKEEYSQYGAVDRVKKLKD---YAFVHFTERDHALKAIEETDGKEM 387
Query: 251 CGRRARVEMS 280
G + ++
Sbjct: 388 DGLKIEASLA 397
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 30.7 bits (66), Expect = 0.54
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLR-NVWVARN---PPGFAFVEFEDPRDAEDAIRGL 235
+ Y+G+L + + LE+ F + V R P GF FV F + E AI
Sbjct: 6 RCYIGNLSYSVDEQALEEKFHGCDVVDVKVITDRETGRPRGFGFVTFGSKEEMEKAIDEF 65
Query: 236 DGRTICGRRARVEMS 280
DG+ GR +V +
Sbjct: 66 DGQDFDGRPMKVNQA 80
>SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)
Length = 97
Score = 30.7 bits (66), Expect = 0.54
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = +2
Query: 110 ELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRGLDGRTI 250
++ AF YG + +VWV ++ G +V+F A A +DGR I
Sbjct: 38 DIRSAFEQYGTIEDVWVVKDKATKENRGVCYVKFVKASSAALACEEMDGRNI 89
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 30.7 bits (66), Expect = 0.54
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 176 GFAFVEFEDPRDAEDAIRGLDGRTICGRRARVEMS 280
G+AFV +++P DA A+R ++G + + +V +
Sbjct: 69 GYAFVNYDNPDDANKAVREMNGARLQNKTLKVSFA 103
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 30.3 bits (65), Expect = 0.72
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +2
Query: 125 FSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRGLDGRTICGRRARVEMS 280
F L N + R+ P GF FV++ DA+ AI L+G TI + +V S
Sbjct: 67 FEAVASLNNCKIVRHKPSGWSYGFGFVDYNTTEDAQKAIDKLNGFTIGNKVLKVAFS 123
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 30.3 bits (65), Expect = 0.72
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVAR----NPPGFAFVEFEDPRDAEDAIRGLD 238
+Y+ +L N + LE+ FS YG + + + R N G F E E I+ +
Sbjct: 181 LYIQNLPQNCDEAMLENMFSKYGKVISTRILRDKDTNSKGVGFARMESAEKCEQVIKDFN 240
Query: 239 GRTICG 256
+ + G
Sbjct: 241 KKMLPG 246
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 30.3 bits (65), Expect = 0.72
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPG---FAFVEFEDPRDAEDAIRGLDG 241
+YVG+L ++ + F+ + + +P + FVEFE DA++A +D
Sbjct: 371 LYVGNLDPKCTQELICSIFNKIAKVVRCKMINSPTDKGPYCFVEFETHADAQEAKFRMDQ 430
Query: 242 RTICGRRARV 271
RT+ ++ +V
Sbjct: 431 RTVMDKKLKV 440
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFV 190
+YVG+L + EL+ FS YG + V + G+AF+
Sbjct: 617 VYVGNLPPDVKDYELQQMFSQYGSILETKVFAD-KGYAFI 655
>SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 29.9 bits (64), Expect = 0.95
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY CG GH+AR+C
Sbjct: 202 CYKCGKYGHFAREC 215
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 29.9 bits (64), Expect = 0.95
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
C+ CG+ GHY+R+C
Sbjct: 405 CHKCGETGHYSREC 418
Score = 28.7 bits (61), Expect = 2.2
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
C+ CG+ GH+AR+C
Sbjct: 382 CHKCGEVGHFAREC 395
>SB_32274| Best HMM Match : RRM_1 (HMM E-Value=0.0026)
Length = 284
Score = 29.9 bits (64), Expect = 0.95
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = +2
Query: 65 CKIYVGDLGNNASKPE-LEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDG 241
C + V L + E + + F YG + V N PG V+ D +E IR L G
Sbjct: 214 CVLMVYGLNHEKMNCERIFNLFCLYGNVIKVKFLTNKPGACMVQMSDKIASEMIIRNLSG 273
Query: 242 RTICGRRARV 271
TI + +
Sbjct: 274 ATIFDNKINI 283
>SB_1325| Best HMM Match : PTSIIA_gutA (HMM E-Value=8.3)
Length = 160
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 398 SNRVHNALCHHNHSSGHHMDVVVAET 321
SN H AL H N S GHH++ V T
Sbjct: 5 SNVSHAALFHPNTSHGHHLNTTVMST 30
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 170 PPGFAFVEFEDPRDAEDAIRGLDGRTICGRRARV 271
P GF FV F + E AI DG+ + GR +V
Sbjct: 136 PRGFGFVTFGSKEEMEKAIDEFDGQDLDGRPMKV 169
>SB_1040| Best HMM Match : RRM_1 (HMM E-Value=1e-05)
Length = 282
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 176 GFAFVEFEDPRDAEDAIRGLDGRTICGRRARV 271
G +EF +D + A+R LDG+ + G+R R+
Sbjct: 204 GEGVIEFATKKDLKKALRKLDGKELKGKRIRL 235
>SB_27592| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-39)
Length = 340
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 398 SNRVHNALCHHNHSSGHHMDVVVAET 321
SN H AL H N S GHH++ V T
Sbjct: 5 SNVSHAALFHPNTSHGHHLNTTVMST 30
>SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19)
Length = 168
Score = 29.1 bits (62), Expect = 1.7
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +2
Query: 65 CKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN----PPGFAFVEFEDPRDAEDAIRG 232
C+++VG + + + EL F GP+ V + + G+AFV + DA+ ++
Sbjct: 74 CEVFVGKIPRDLYEDELVPVFETAGPIYEVRLMMDFNGQNRGYAFVVYTSKDDAKRCVKT 133
Query: 233 LDGRTI 250
L+ I
Sbjct: 134 LNNYEI 139
>SB_47578| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 744
Score = 29.1 bits (62), Expect = 1.7
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
C+ CG+ GH+A DC
Sbjct: 680 CFRCGEEGHWAEDC 693
>SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)
Length = 553
Score = 29.1 bits (62), Expect = 1.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
C+ CG RGH+AR C
Sbjct: 536 CFHCGMRGHWARSC 549
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 29.1 bits (62), Expect = 1.7
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY C + GH+AR+C
Sbjct: 521 CYKCNETGHFAREC 534
Score = 29.1 bits (62), Expect = 1.7
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY C + GH+AR+C
Sbjct: 603 CYKCNETGHFAREC 616
Score = 27.5 bits (58), Expect = 5.0
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
C+ C + GH+AR+C
Sbjct: 466 CHKCNEEGHFAREC 479
Score = 27.5 bits (58), Expect = 5.0
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
C+ C + GH+AR+C
Sbjct: 489 CFKCNESGHFAREC 502
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 29.1 bits (62), Expect = 1.7
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY C + GH+AR+C
Sbjct: 26 CYKCNETGHFAREC 39
>SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1958
Score = 28.7 bits (61), Expect = 2.2
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY+CG+RGH A C
Sbjct: 113 CYNCGERGHVAIGC 126
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 28.7 bits (61), Expect = 2.2
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +2
Query: 176 GFAFVEFEDPRDAEDAIRGLDGRTICGRRARVEMSN 283
GF FV+++D A+ + + G + GR+ R++ ++
Sbjct: 328 GFGFVDYDDVETAKKVLSEMAGAEVDGRQVRLDFAS 363
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 28.7 bits (61), Expect = 2.2
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFEDPRDAEDAIR 229
K++VG L + L + F YG L +V V + GF +V F D + + ++
Sbjct: 15 KLFVGGLNRETTNETLREYFEAYGELTDVVVICDSATKKSRGFGYVTFADYKVTRNVLK 73
>SB_34470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 28.7 bits (61), Expect = 2.2
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 188 VEFEDPRDAEDAIRGLDGRTICGRR 262
+EF+D RDA+DA+ L+ + + G R
Sbjct: 310 LEFDDARDADDAVYELNHKELLGER 334
Score = 28.3 bits (60), Expect = 2.9
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRT 247
++ V +L A +L+D G + ++ G +F + D A++ LDG
Sbjct: 344 RLIVENLSTRAGWQDLKDYMRQAGEVTFTQCHKDRVGEGVCDFSNESDMLYALKKLDGTE 403
Query: 248 ICGRRAR-VEMS 280
+ G+R R VE+S
Sbjct: 404 LFGKRIRLVEIS 415
>SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)
Length = 600
Score = 28.7 bits (61), Expect = 2.2
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY+CG+RGH A C
Sbjct: 370 CYNCGERGHVAIGC 383
>SB_10860| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1292
Score = 28.7 bits (61), Expect = 2.2
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY+CG+RGH A C
Sbjct: 237 CYNCGERGHVAIGC 250
>SB_20265| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 730
Score = 28.3 bits (60), Expect = 2.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY C D H+ARDC
Sbjct: 3 CYRCHDPSHFARDC 16
>SB_9084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 28.3 bits (60), Expect = 2.9
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -2
Query: 371 HHNHSSGHHMDVVVAETAAEDHGRHNLVHH 282
HH+H HH D + DH H+ HH
Sbjct: 5 HHHHHDHHHHDHHHHDHQHHDHQHHDHQHH 34
>SB_56406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 481
Score = 27.9 bits (59), Expect = 3.8
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
C+ CG R HYAR C
Sbjct: 203 CHKCGKRNHYARMC 216
>SB_45173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 487
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Frame = -2
Query: 434 CETSNDCVYAFESNRVHNALCHHNHSSGHHM-DVVVAETAAEDHGRHNLVHH 282
C T CV A N + L H M D+++ H +H+L HH
Sbjct: 116 CRTQEHCVVAPARNNKWHPLVAFVRRIAHDMTDIILYNVNRHHHYQHHLHHH 167
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEF 196
K++VG L + ++ L + F+ +G + +V++ + F FV F
Sbjct: 200 KLFVGRLPESTTEKTLMEYFAQFGEVTDVYIPKPFRHFGFVTF 242
>SB_56032| Best HMM Match : zf-CCHC (HMM E-Value=0.00047)
Length = 632
Score = 27.9 bits (59), Expect = 3.8
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
C+ CG R HYAR C
Sbjct: 238 CHKCGKRNHYARMC 251
>SB_35375| Best HMM Match : RVT_1 (HMM E-Value=0.00074)
Length = 996
Score = 27.9 bits (59), Expect = 3.8
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
C+ CG R HYAR C
Sbjct: 64 CHKCGKRNHYARMC 77
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 27.9 bits (59), Expect = 3.8
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = +2
Query: 98 ASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRGLDGRTICGRR 262
AS L F +G L+ V R+P GF F+ F+DP+ A D + + + G++
Sbjct: 119 ASAEGLRQHFEKFGELKECVVMRDPVTKRSRGFGFLTFKDPK-AVDVVLNSGAQELDGKK 177
>SB_7499| Best HMM Match : zf-CCHC (HMM E-Value=0.00029)
Length = 846
Score = 27.5 bits (58), Expect = 5.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY C D H+ARDC
Sbjct: 136 CYRCLDPSHFARDC 149
>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
Length = 1366
Score = 27.5 bits (58), Expect = 5.0
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
C+ CG GH+A++C
Sbjct: 447 CFKCGQEGHWAKNC 460
>SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 27.5 bits (58), Expect = 5.0
Identities = 29/107 (27%), Positives = 38/107 (35%), Gaps = 3/107 (2%)
Frame = -2
Query: 431 ETSNDCVYAFESNRVHNALCHHN--HSSGHHMDVVVAETAAEDHGRHNLVHH*TSLRERG 258
ETS ESNR H H H + H E++ + RH H TS ER
Sbjct: 15 ETSRHERSRHESNR-HKTSRHERSRHETSRH------ESSPHETSRHETSRHETSRHERS 67
Query: 257 VHILYVHLNLGWRPQRHEDLQILQKRN-RVDFWPPIHFSKDHSKKMH 120
H H + RHE + R+ R H + H + H
Sbjct: 68 RHETRQHERSRHKTSRHESSRHKTSRHGRSRHKTSRHETSRHERSRH 114
>SB_22052| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 216
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 185 FVEFEDPRDAEDAIRGLDGRTI-CGRRARVEMS 280
FV F R+AE AIR DG + G R RV++S
Sbjct: 147 FVGFSSYREAEHAIRKFDGFDLGQGLRLRVQLS 179
>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 185 FVEFEDPRDAEDAIRGLDGRTI-CGRRARVEMS 280
FV F R+AE AIR DG + G R RV++S
Sbjct: 47 FVGFSSYREAEHAIRKFDGFDLGQGLRLRVQLS 79
>SB_53824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 740
Score = 27.1 bits (57), Expect = 6.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 356 CYDCGDRGHYARD 394
C+ CG RGH ARD
Sbjct: 197 CFRCGKRGHVARD 209
>SB_41121| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
Length = 550
Score = 27.1 bits (57), Expect = 6.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 356 CYDCGDRGHYARD 394
C+ CG RGH ARD
Sbjct: 122 CFRCGKRGHVARD 134
>SB_34988| Best HMM Match : zf-CCHC (HMM E-Value=3e-12)
Length = 469
Score = 27.1 bits (57), Expect = 6.7
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
C++C +RGH A DC
Sbjct: 126 CHNCNERGHMAVDC 139
>SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
Length = 1131
Score = 27.1 bits (57), Expect = 6.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 356 CYDCGDRGHYARD 394
C+ CG RGH ARD
Sbjct: 278 CFRCGKRGHVARD 290
>SB_29554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.1 bits (57), Expect = 6.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 413 VYAFESNRVHNALCHHNHSSGHHMDVVVAET 321
V+ F+S + LC+HN + H+D VV T
Sbjct: 77 VWDFQSRSPNVYLCYHNKVACFHIDPVVEST 107
>SB_15066| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
Length = 338
Score = 27.1 bits (57), Expect = 6.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 356 CYDCGDRGHYARD 394
C+ CG RGH ARD
Sbjct: 252 CFRCGKRGHVARD 264
>SB_14798| Best HMM Match : zf-CCHC (HMM E-Value=0.00014)
Length = 377
Score = 27.1 bits (57), Expect = 6.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 356 CYDCGDRGHYARD 394
C+ CG RGH ARD
Sbjct: 133 CFRCGKRGHVARD 145
>SB_4685| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 27.1 bits (57), Expect = 6.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 356 CYDCGDRGHYARD 394
C+ CG RGH ARD
Sbjct: 76 CFRCGKRGHVARD 88
>SB_3642| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
Length = 283
Score = 27.1 bits (57), Expect = 6.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 356 CYDCGDRGHYARD 394
C+ CG RGH ARD
Sbjct: 197 CFRCGKRGHVARD 209
>SB_3304| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
Length = 285
Score = 27.1 bits (57), Expect = 6.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 356 CYDCGDRGHYARD 394
C+ CG RGH ARD
Sbjct: 6 CFRCGKRGHVARD 18
>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 27.1 bits (57), Expect = 6.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 356 CYDCGDRGHYARD 394
C+ CG RGH ARD
Sbjct: 1210 CFRCGKRGHVARD 1222
>SB_36113| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
Length = 283
Score = 27.1 bits (57), Expect = 6.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 356 CYDCGDRGHYARD 394
C+ CG RGH ARD
Sbjct: 197 CFRCGKRGHVARD 209
>SB_32933| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
Length = 92
Score = 27.1 bits (57), Expect = 6.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 356 CYDCGDRGHYARD 394
C+ CG RGH ARD
Sbjct: 6 CFRCGKRGHVARD 18
>SB_23479| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 45
Score = 27.1 bits (57), Expect = 6.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 356 CYDCGDRGHYARD 394
C+ CG RGH ARD
Sbjct: 6 CFRCGKRGHVARD 18
>SB_15517| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
Length = 799
Score = 27.1 bits (57), Expect = 6.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 356 CYDCGDRGHYARD 394
C+ CG RGH ARD
Sbjct: 197 CFRCGKRGHVARD 209
>SB_5379| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
Length = 285
Score = 27.1 bits (57), Expect = 6.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 356 CYDCGDRGHYARD 394
C+ CG RGH ARD
Sbjct: 6 CFRCGKRGHVARD 18
>SB_4252| Best HMM Match : zf-CCHC (HMM E-Value=0.00032)
Length = 129
Score = 27.1 bits (57), Expect = 6.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 356 CYDCGDRGHYARD 394
C+ CG RGH ARD
Sbjct: 58 CFRCGKRGHVARD 70
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 176 GFAFVEFEDPRDAEDAIRGLDGRTICGRRARVEM 277
GF FV F +A A L+G + GR+ V +
Sbjct: 125 GFGFVTFNTAAEANKAREKLNGTIVDGRKVEVSL 158
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 26.6 bits (56), Expect = 8.8
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +2
Query: 134 YGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRGLDGRTICGRRARVE 274
YG + NV + R+ GF F+ +ED R A+ +G + GR RV+
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNGIKLGGRTIRVD 53
>SB_13196| Best HMM Match : VSP (HMM E-Value=1.4)
Length = 500
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = -2
Query: 416 CVYAFESNRVHNALCHHNHSSGHHMDVVVAETAAEDHGR 300
C + +R H C H HS HM E + + H R
Sbjct: 316 CTHEHSEDR-HMKTCTHEHSEDGHMKTCTHEQSEDGHMR 353
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,016,559
Number of Sequences: 59808
Number of extensions: 253727
Number of successful extensions: 1052
Number of sequences better than 10.0: 102
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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