Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_D24
(435 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 94 3e-20
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 92 2e-19
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 91 2e-19
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 91 2e-19
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 79 1e-15
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 79 1e-15
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 77 7e-15
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 77 7e-15
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 77 7e-15
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 77 7e-15
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 74 5e-14
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 74 5e-14
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 65 2e-11
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 54 4e-08
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 54 5e-08
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 52 2e-07
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 52 2e-07
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 52 2e-07
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 52 2e-07
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 50 5e-07
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 49 1e-06
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 49 1e-06
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 49 2e-06
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 49 2e-06
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 47 5e-06
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 47 5e-06
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 47 6e-06
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 46 1e-05
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 46 1e-05
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 46 1e-05
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 45 2e-05
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 45 2e-05
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 45 3e-05
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 45 3e-05
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 45 3e-05
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 45 3e-05
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 44 6e-05
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 44 6e-05
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 43 8e-05
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 43 8e-05
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 43 1e-04
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 43 1e-04
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 43 1e-04
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 43 1e-04
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 42 2e-04
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 42 2e-04
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 41 3e-04
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 41 3e-04
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 41 3e-04
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 41 3e-04
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 41 4e-04
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 41 4e-04
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 40 5e-04
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 40 5e-04
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 40 7e-04
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 40 7e-04
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 40 7e-04
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 40 7e-04
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 40 0.001
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 40 0.001
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 40 0.001
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 40 0.001
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 40 0.001
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 40 0.001
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 40 0.001
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 39 0.001
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 39 0.001
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 39 0.001
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 39 0.001
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 39 0.001
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 39 0.002
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 39 0.002
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 39 0.002
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 39 0.002
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 39 0.002
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 38 0.002
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 38 0.002
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 38 0.002
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 38 0.002
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 38 0.003
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 38 0.004
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 38 0.004
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 38 0.004
At2g47310.1 68415.m05906 flowering time control protein-related ... 38 0.004
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 38 0.004
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 38 0.004
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 38 0.004
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 38 0.004
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 37 0.005
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 37 0.005
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 37 0.005
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 37 0.005
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 37 0.007
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 37 0.007
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 36 0.009
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 36 0.009
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 36 0.009
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 36 0.012
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 36 0.012
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 36 0.012
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 36 0.012
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 36 0.012
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 36 0.012
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 36 0.012
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 36 0.012
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 36 0.016
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 36 0.016
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 35 0.027
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 35 0.027
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 35 0.027
At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A / s... 35 0.027
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 34 0.036
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 34 0.036
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 34 0.036
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 34 0.048
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 34 0.048
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 34 0.048
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 33 0.063
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 33 0.063
At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing ... 33 0.083
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 33 0.083
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 33 0.083
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 33 0.083
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 33 0.083
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 33 0.083
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 33 0.11
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 33 0.11
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 33 0.11
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 32 0.15
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 32 0.15
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 32 0.15
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 32 0.15
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 32 0.15
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 32 0.19
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 32 0.19
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 32 0.19
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 32 0.19
At3g21215.1 68416.m02681 RNA-binding protein, putative contains ... 32 0.19
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 32 0.19
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 32 0.19
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 32 0.19
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 31 0.25
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 31 0.25
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 31 0.25
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 31 0.25
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 31 0.34
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 31 0.34
At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B, pu... 31 0.34
At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B, pu... 31 0.34
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 31 0.44
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 31 0.44
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 31 0.44
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 31 0.44
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 31 0.44
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 31 0.44
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 31 0.44
At1g13450.1 68414.m01572 DNA binding protein GT-1 identical to D... 31 0.44
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 30 0.59
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 30 0.59
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 30 0.77
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 30 0.77
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 25 0.94
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 29 1.0
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 29 1.0
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 29 1.0
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 29 1.0
At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing ... 29 1.0
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 29 1.0
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 29 1.4
At4g38180.1 68417.m05390 far-red impaired responsive protein, pu... 29 1.4
At4g01290.1 68417.m00170 expressed protein 29 1.4
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 29 1.4
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 29 1.4
At5g24440.1 68418.m02880 RNA-binding protein, putative 29 1.8
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 29 1.8
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 29 1.8
At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) famil... 29 1.8
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 29 1.8
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 29 1.8
At5g33200.1 68418.m03919 hypothetical protein predicted replicat... 28 2.4
At2g33440.1 68415.m04099 splicing factor family protein similar ... 28 2.4
At2g06904.1 68415.m00778 hypothetical protein 28 2.4
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 28 2.4
At5g37510.2 68418.m04518 NADH-ubiquinone dehydrogenase, mitochon... 28 3.1
At5g37510.1 68418.m04517 NADH-ubiquinone dehydrogenase, mitochon... 28 3.1
At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein... 28 3.1
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 28 3.1
At5g53180.1 68418.m06611 polypyrimidine tract-binding protein, p... 27 4.1
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 27 4.1
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 27 4.1
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 27 4.1
At5g50240.1 68418.m06222 protein-L-isoaspartate O-methyltransfer... 27 5.5
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 27 5.5
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 27 5.5
At3g01150.1 68416.m00019 polypyrimidine tract-binding protein, p... 27 5.5
At5g60780.1 68418.m07626 high-affinity nitrate transporter, puta... 27 7.2
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 27 7.2
At4g40020.1 68417.m05666 hypothetical protein 27 7.2
At3g08570.1 68416.m00994 phototropic-responsive protein, putativ... 27 7.2
At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein, c... 27 7.2
At1g10520.1 68414.m01184 DNA polymerase lambda (POLL) identical ... 27 7.2
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 26 9.5
At3g45060.1 68416.m04857 high-affinity nitrate transporter, puta... 26 9.5
At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4) ... 26 9.5
At1g65670.1 68414.m07452 cytochrome P450 family protein similar ... 26 9.5
At1g60095.1 68414.m06771 jacalin lectin family protein contains ... 26 9.5
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 26 9.5
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 94.3 bits (224), Expect = 3e-20
Identities = 48/116 (41%), Positives = 65/116 (56%), Gaps = 6/116 (5%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRT 247
++YVG+L ++ ELED F +G +R+VWVAR PPG+AF++FEDPRDA DAIR LDG+
Sbjct: 3 RVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDGKN 62
Query: 248 ICGRRARVEMSNXXXXXXXXXXXXXXXXXXXX------XXXXCYDCGDRGHYARDC 397
RVE S+ CY+CG+ GH+AR+C
Sbjct: 63 ----GWRVEQSHNRGERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFAREC 114
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 91.9 bits (218), Expect = 2e-19
Identities = 46/113 (40%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRT 247
++YVG+L ++ ELED F +G +R+VWVAR PPG+AF++FED RDA DAIR +DG+
Sbjct: 3 RVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDGK- 61
Query: 248 ICGRRARVEMSN---XXXXXXXXXXXXXXXXXXXXXXXXCYDCGDRGHYARDC 397
RVE S+ CY+CG+ GH+AR+C
Sbjct: 62 ---NGWRVEQSHNRGGGGGRGGGRGGGDGGRGRGGSDLKCYECGESGHFAREC 111
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 91.5 bits (217), Expect = 2e-19
Identities = 47/110 (42%), Positives = 63/110 (57%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRT 247
++YVG+L ++ ELED F +G LRNVWVAR PPG+AF+EF+D RDA DAI LD +
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDRK- 61
Query: 248 ICGRRARVEMSNXXXXXXXXXXXXXXXXXXXXXXXXCYDCGDRGHYARDC 397
RVE+S+ CY+CG+ GH+AR+C
Sbjct: 62 ---NGWRVELSH----KDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 91.5 bits (217), Expect = 2e-19
Identities = 47/110 (42%), Positives = 63/110 (57%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRT 247
++YVG+L ++ ELED F +G LRNVWVAR PPG+AF+EF+D RDA DAI LD +
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDRK- 61
Query: 248 ICGRRARVEMSNXXXXXXXXXXXXXXXXXXXXXXXXCYDCGDRGHYARDC 397
RVE+S+ CY+CG+ GH+AR+C
Sbjct: 62 ---NGWRVELSH----KDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 79.4 bits (187), Expect = 1e-15
Identities = 46/115 (40%), Positives = 60/115 (52%)
Frame = +2
Query: 53 RYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRG 232
RYG+ ++YVG L + +LE FS YG +R+V + R+ +AFVEF DPRDA+DA
Sbjct: 7 RYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFGDPRDADDARHY 63
Query: 233 LDGRTICGRRARVEMSNXXXXXXXXXXXXXXXXXXXXXXXXCYDCGDRGHYARDC 397
LDGR G R VE S C++CG GH+ARDC
Sbjct: 64 LDGRDFDGSRITVEFSR----GAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDC 114
Score = 29.5 bits (63), Expect = 1.0
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY CG+RGH R+C
Sbjct: 123 CYRCGERGHIERNC 136
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 79.0 bits (186), Expect = 1e-15
Identities = 46/115 (40%), Positives = 60/115 (52%)
Frame = +2
Query: 53 RYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRG 232
RYG+ ++YVG L + +LE FS YG +R+V + R+ +AFVEF DPRDA+DA
Sbjct: 7 RYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFSDPRDADDARYY 63
Query: 233 LDGRTICGRRARVEMSNXXXXXXXXXXXXXXXXXXXXXXXXCYDCGDRGHYARDC 397
LDGR G R VE S C++CG GH+ARDC
Sbjct: 64 LDGRDFDGSRITVEASR----GAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDC 114
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 76.6 bits (180), Expect = 7e-15
Identities = 40/81 (49%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
Frame = +2
Query: 47 MSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNV--WVARNPPGFAFVEFEDPRDAED 220
MS + IYVG+L + K E+ED F YGP+ ++ + PPG+AFVEFEDPRDA+D
Sbjct: 1 MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60
Query: 221 AIRGLDGRTICGRRARVEMSN 283
AI G DG G R RVE+++
Sbjct: 61 AIYGRDGYDFDGCRLRVEIAH 81
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 76.6 bits (180), Expect = 7e-15
Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Frame = +2
Query: 47 MSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNV--WVARNPPGFAFVEFEDPRDAED 220
MS +YVG+L + + E+ED FS YGP+ + V PPG+AFVEF+D RDAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 221 AIRGLDGRTICGRRARVEMSN 283
AI G DG G R RVE+++
Sbjct: 61 AIHGRDGYDFDGHRLRVELAH 81
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 76.6 bits (180), Expect = 7e-15
Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Frame = +2
Query: 47 MSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNV--WVARNPPGFAFVEFEDPRDAED 220
MS +YVG+L + + E+ED FS YGP+ + V PPG+AFVEF+D RDAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 221 AIRGLDGRTICGRRARVEMSN 283
AI G DG G R RVE+++
Sbjct: 61 AIHGRDGYDFDGHRLRVELAH 81
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 76.6 bits (180), Expect = 7e-15
Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Frame = +2
Query: 47 MSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNV--WVARNPPGFAFVEFEDPRDAED 220
MS +YVG+L + + E+ED FS YGP+ + V PPG+AFVEF+D RDAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 221 AIRGLDGRTICGRRARVEMSN 283
AI G DG G R RVE+++
Sbjct: 61 AIHGRDGYDFDGHRLRVELAH 81
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 73.7 bits (173), Expect = 5e-14
Identities = 38/81 (46%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Frame = +2
Query: 47 MSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNV--WVARNPPGFAFVEFEDPRDAED 220
MS IYVG+L + + E+ED FS YGP+ + + PPG+AFVEFED RDA+D
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60
Query: 221 AIRGLDGRTICGRRARVEMSN 283
AI G DG G RVE+++
Sbjct: 61 AIYGRDGYDFDGHHLRVELAH 81
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 73.7 bits (173), Expect = 5e-14
Identities = 38/81 (46%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Frame = +2
Query: 47 MSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNV--WVARNPPGFAFVEFEDPRDAED 220
MS IYVG+L + + E+ED FS YGP+ + + PPG+AFVEFED RDA+D
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60
Query: 221 AIRGLDGRTICGRRARVEMSN 283
AI G DG G RVE+++
Sbjct: 61 AIYGRDGYDFDGHHLRVELAH 81
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 65.3 bits (152), Expect = 2e-11
Identities = 34/73 (46%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVW--VARNPPGFAFVEFEDPRDAEDAIRGLDGR 244
IYVG+L + + E+ED F YG + ++ V PP + FVEFE RDAEDAI+G DG
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRDGY 68
Query: 245 TICGRRARVEMSN 283
+ G R RVE+++
Sbjct: 69 NLDGCRLRVELAH 81
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 54.0 bits (124), Expect = 4e-08
Identities = 30/73 (41%), Positives = 35/73 (47%)
Frame = +2
Query: 179 FAFVEFEDPRDAEDAIRGLDGRTICGRRARVEMSNXXXXXXXXXXXXXXXXXXXXXXXXC 358
+AFVEF DPRDA+DA LDGR G R VE S C
Sbjct: 5 YAFVEFGDPRDADDARHYLDGRDFDGSRITVEFSR----GAPRGSRDFDSRGPPPGAGRC 60
Query: 359 YDCGDRGHYARDC 397
++CG GH+ARDC
Sbjct: 61 FNCGVDGHWARDC 73
Score = 29.5 bits (63), Expect = 1.0
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY CG+RGH R+C
Sbjct: 82 CYRCGERGHIERNC 95
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 53.6 bits (123), Expect = 5e-08
Identities = 30/73 (41%), Positives = 35/73 (47%)
Frame = +2
Query: 179 FAFVEFEDPRDAEDAIRGLDGRTICGRRARVEMSNXXXXXXXXXXXXXXXXXXXXXXXXC 358
+AFVEF DPRDA+DA LDGR G R VE S C
Sbjct: 5 YAFVEFSDPRDADDARYYLDGRDFDGSRITVEASR----GAPRGSRDNGSRGPPPGSGRC 60
Query: 359 YDCGDRGHYARDC 397
++CG GH+ARDC
Sbjct: 61 FNCGVDGHWARDC 73
Score = 29.5 bits (63), Expect = 1.0
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY CG+RGH R+C
Sbjct: 82 CYRCGERGHIERNC 95
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 52.0 bits (119), Expect = 2e-07
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 8/120 (6%)
Frame = +2
Query: 62 DCKIYVGDLGNNASKPELEDAFSYYGPLRN--VWVARN---PPGFAFVEFEDPRDAEDAI 226
+ +I+VG L + ++ +LE F YG + + V R+ P GF F+ F D R A+DAI
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 227 RGLDGRTICGRRARVEMSN---XXXXXXXXXXXXXXXXXXXXXXXXCYDCGDRGHYARDC 397
+ + GR + + V + C+ C GH+ARDC
Sbjct: 71 KHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDC 130
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 52.0 bits (119), Expect = 2e-07
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 8/120 (6%)
Frame = +2
Query: 62 DCKIYVGDLGNNASKPELEDAFSYYGPLRN--VWVARN---PPGFAFVEFEDPRDAEDAI 226
+ +I+VG L + ++ +LE F YG + + V R+ P GF F+ F D R A+DAI
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 227 RGLDGRTICGRRARVEMSN---XXXXXXXXXXXXXXXXXXXXXXXXCYDCGDRGHYARDC 397
+ + GR + + V + C+ C GH+ARDC
Sbjct: 71 KHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDC 130
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 51.6 bits (118), Expect = 2e-07
Identities = 34/72 (47%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLD---- 238
++ G+ +A + +LE F YG + V + GFAFV ED RDAEDAIR LD
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKA---GFAFVYMEDERDAEDAIRALDRFEY 60
Query: 239 GRTICGRRARVE 274
GRT GRR RVE
Sbjct: 61 GRT--GRRLRVE 70
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 51.6 bits (118), Expect = 2e-07
Identities = 34/72 (47%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLD---- 238
++ G+ +A + +LE F YG + V + GFAFV ED RDAEDAIR LD
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKA---GFAFVYMEDERDAEDAIRALDRFEY 60
Query: 239 GRTICGRRARVE 274
GRT GRR RVE
Sbjct: 61 GRT--GRRLRVE 70
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 50.4 bits (115), Expect = 5e-07
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Frame = +2
Query: 41 GIMSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDP 205
G SR + V +L ++ + +L +F +GP++++++ R+ P GF FV+F DP
Sbjct: 28 GGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDP 87
Query: 206 RDAEDAIRGLDGRTICGRRARV 271
DA DA +DG + GR V
Sbjct: 88 ADAADAKHHMDGYLLLGRELTV 109
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 49.2 bits (112), Expect = 1e-06
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 5/63 (7%)
Frame = +2
Query: 110 ELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRGLDGRTICGRRARVE 274
EL + F +GP+R+V++ R+ P GFAFVEF D DA +A R ++ R+ GR V
Sbjct: 62 ELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVV 121
Query: 275 MSN 283
+++
Sbjct: 122 VAS 124
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 49.2 bits (112), Expect = 1e-06
Identities = 29/65 (44%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 250
+YVG+ + +LE FS +G ++ V + G+AFV FED RDAEDAIR D T
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDMKS---GYAFVYFEDERDAEDAIRRTDNTTF 60
Query: 251 -CGRR 262
GRR
Sbjct: 61 GYGRR 65
Score = 29.1 bits (62), Expect = 1.4
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 110 ELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTICGRRARVE 274
++E F YG + NV + RN FAFV+F DA A+ + + VE
Sbjct: 111 DMERHFEPYGKVLNVRMRRN---FAFVQFATQEDATKALDSTHNSKLLDKVVSVE 162
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 48.8 bits (111), Expect = 2e-06
Identities = 33/72 (45%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLD---- 238
++ G+ +A + +LE F YG + V + GFAFV ED RDAEDAIR LD
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKA---GFAFVYMEDERDAEDAIRALDRFEF 60
Query: 239 GRTICGRRARVE 274
GR GRR RVE
Sbjct: 61 GRK--GRRLRVE 70
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 48.8 bits (111), Expect = 2e-06
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRG 232
++YVG+L + L +AFS YG + + V R+ GF FV + +AE A+ G
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 233 LDGRTICGRRARVEM 277
+DG+ + GRR V++
Sbjct: 64 MDGKELNGRRVSVKL 78
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 47.2 bits (107), Expect = 5e-06
Identities = 27/69 (39%), Positives = 31/69 (44%)
Frame = +2
Query: 191 EFEDPRDAEDAIRGLDGRTICGRRARVEMSNXXXXXXXXXXXXXXXXXXXXXXXXCYDCG 370
EF DPRDA+DA LDGR G R VE S C++CG
Sbjct: 20 EFGDPRDADDARHYLDGRDFDGSRITVEFSR----GAPRGSRDFDSRGPPPGAGRCFNCG 75
Query: 371 DRGHYARDC 397
GH+ARDC
Sbjct: 76 VDGHWARDC 84
Score = 29.5 bits (63), Expect = 1.0
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY CG+RGH R+C
Sbjct: 93 CYRCGERGHIERNC 106
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 47.2 bits (107), Expect = 5e-06
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Frame = +2
Query: 47 MSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP----GFAFVEFEDPRDA 214
+ + + +YVGDL + ++ L D F+ P+ N+ V R+ G+A+V F +P DA
Sbjct: 39 LQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDA 98
Query: 215 EDAIRGLDGRTICGRRARVEMSN 283
A+ L+ I R R+ +SN
Sbjct: 99 SRAMESLNYAPIRDRPIRIMLSN 121
Score = 31.9 bits (69), Expect = 0.19
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPG----FAFVEFEDPRDAEDAIRGLD 238
+YV +L + EL+ F YG + + V ++ G F FV F P A A+ ++
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 286
Query: 239 G 241
G
Sbjct: 287 G 287
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 46.8 bits (106), Expect = 6e-06
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRGL 235
+ V +L ++ + +L F +GP++++++ R+ P GF F++F DP DA +A +
Sbjct: 39 LLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQM 98
Query: 236 DGRTICGRRARV 271
DG + GR V
Sbjct: 99 DGYLLLGRELTV 110
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 46.0 bits (104), Expect = 1e-05
Identities = 22/67 (32%), Positives = 39/67 (58%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 250
++V +L ++ S EL FS YG +R V + ++EF D R A+ A++GL+G +
Sbjct: 297 LWVNNLDSSISNEELHGIFSSYGEIREVRRTMHENSQVYIEFFDVRKAKVALQGLNGLEV 356
Query: 251 CGRRARV 271
GR+ ++
Sbjct: 357 AGRQLKL 363
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 46.0 bits (104), Expect = 1e-05
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRGL 235
++V L +S+ +++ F YGP++ V + + P G+AF+E+ RD + A +
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199
Query: 236 DGRTICGRRARVEM 277
DG+ I GRR V++
Sbjct: 200 DGQKIDGRRVLVDV 213
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 46.0 bits (104), Expect = 1e-05
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 5/114 (4%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFEDPRDAEDAIRGL 235
+YV +L + + ++ FS +G + V V R G AFV + DA A R +
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 236 DGRTICGRRARVEMSNXXXXXXXXXXXXXXXXXXXXXXXXCYDCGDRGHYARDC 397
D + + GR+ V ++ CY+CGD GH + +C
Sbjct: 119 DAKILNGRKLTVSIA-----ADNGRASEFIKKRVYKDKSRCYECGDEGHLSYEC 167
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 45.2 bits (102), Expect = 2e-05
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVA--RNPPG--FAFVEFEDPRDAEDAIRGLD 238
+YVG L + ++ + FS YG + V + R+ G + FV F + R A+DAI +D
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDMD 68
Query: 239 GRTICGRRARV 271
G++I GR RV
Sbjct: 69 GKSIGGRAVRV 79
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 45.2 bits (102), Expect = 2e-05
Identities = 25/56 (44%), Positives = 33/56 (58%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLD 238
++VG+ + +LE F YG + V + G+AFV FED RDAEDAIR LD
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKS---GYAFVYFEDERDAEDAIRKLD 56
Score = 34.3 bits (75), Expect = 0.036
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = +2
Query: 110 ELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTICGRRARVE 274
++E F YG + NV + RN F+FV+FE DA A+ I R VE
Sbjct: 109 DIEKHFEPYGKVTNVRIRRN---FSFVQFETQEDATKALEATQRSKILDRVVSVE 160
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 44.8 bits (101), Expect = 3e-05
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Frame = +2
Query: 59 GDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDA 223
G + + +L +A +L D+F +GPL+++++ RN P GF FV++ DA +A
Sbjct: 45 GPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEA 104
Query: 224 IRGLDGRTICGRRARV 271
++ ++ + I GR +
Sbjct: 105 MKRMNHKVIGGREIAI 120
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 44.8 bits (101), Expect = 3e-05
Identities = 23/70 (32%), Positives = 38/70 (54%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 250
+ V +L + S +LE+ F YG ++ + N FVEF D R A+ A++ L+ I
Sbjct: 224 LVVFNLAPSVSNRDLENIFGVYGEIKEIRETPNKRHHKFVEFFDVRSADAALKALNRTEI 283
Query: 251 CGRRARVEMS 280
G+R ++E S
Sbjct: 284 AGKRIKLEHS 293
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 44.8 bits (101), Expect = 3e-05
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRG 232
K+++G L + + L+DAFS +G + V +A + GF FV+F + DA A
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 233 LDGRTICGRRARVEMS 280
+DG+ + GR R+ +
Sbjct: 102 MDGKGLLGRPLRISFA 117
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 44.8 bits (101), Expect = 3e-05
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNV-----WVARNPPGFAFVEFEDPRDAEDAIRG 232
K+YV L ++ L D F +G L ++ VA P GFAF+ +E +A AI+G
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQG 137
Query: 233 LDGRTICGRRARVE 274
+ G+ + GR VE
Sbjct: 138 MHGKFLDGRVIFVE 151
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 43.6 bits (98), Expect = 6e-05
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Frame = +2
Query: 53 RYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAE 217
RY K++VG L L+ AF+ +G + V + GF FV F A
Sbjct: 31 RYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSAN 90
Query: 218 DAIRGLDGRTICGRRARVEMS 280
+AI+ +DG+ + GR+ RV ++
Sbjct: 91 NAIKEMDGKELNGRQIRVNLA 111
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 43.6 bits (98), Expect = 6e-05
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Frame = +2
Query: 53 RYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAE 217
RY K++VG L L+ AF+ +G + V + GF FV F A
Sbjct: 31 RYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSAN 90
Query: 218 DAIRGLDGRTICGRRARVEMS 280
+AI+ +DG+ + GR+ RV ++
Sbjct: 91 NAIKEMDGKELNGRQIRVNLA 111
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 43.2 bits (97), Expect = 8e-05
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPL--RNVWVARNPP---GFAFVEFEDPRDAEDAIRG 232
K+++G L L DAF+++G + V V R GF FV F D A AI
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 233 LDGRTICGRRARVEMSN 283
+DG+ + GR RV +N
Sbjct: 96 MDGKELNGRHIRVNPAN 112
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 43.2 bits (97), Expect = 8e-05
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPL--RNVWVARNPP---GFAFVEFEDPRDAEDAIRG 232
K+++G L L DAF+++G + V V R GF FV F D A AI
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 233 LDGRTICGRRARVEMSN 283
+DG+ + GR RV +N
Sbjct: 96 MDGKELNGRHIRVNPAN 112
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 42.7 bits (96), Expect = 1e-04
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRG 232
K+++G + + + L +AF+ YG + + V + GF FV F A AI+
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 233 LDGRTICGRRARVEMSN 283
LDGR + GR +V +N
Sbjct: 101 LDGRDLHGRVVKVNYAN 117
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 42.7 bits (96), Expect = 1e-04
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Frame = +2
Query: 47 MSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRD 211
M++ +++V L + L FS +G ++ + R+ P GF F+ F+ D
Sbjct: 1 MAKRISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDD 60
Query: 212 AEDAIRGLDGRTICGRRARVEMS 280
A A++ LDG+ + GR VE++
Sbjct: 61 ARKALKSLDGKIVDGRLIFVEVA 83
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 42.7 bits (96), Expect = 1e-04
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPG----FAFVEFEDPRDAEDAIRGLD 238
+YV +L + EL+ F YG + + V R+ G F FV FE+P DA A+ L+
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Query: 239 GR 244
G+
Sbjct: 287 GK 288
Score = 38.7 bits (86), Expect = 0.002
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Frame = +2
Query: 65 CKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIR 229
C +YVGDL N + +L D F+ + +V V R+ G+ +V + + DAE A++
Sbjct: 46 CSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ 105
Query: 230 GLDGRTICGRRARVEMSN 283
L+ + G+ R+ S+
Sbjct: 106 KLNYSYLNGKMIRITYSS 123
Score = 33.1 bits (72), Expect = 0.083
Identities = 17/81 (20%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Frame = +2
Query: 50 SRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFA----FVEFEDPRDAE 217
+++ +YV +L + + +L + F+ +G + + V R+P G + FV F +A
Sbjct: 323 NKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEAS 382
Query: 218 DAIRGLDGRTICGRRARVEMS 280
+ ++G+ + G+ V ++
Sbjct: 383 RVLNEMNGKMVGGKPLYVALA 403
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 42.7 bits (96), Expect = 1e-04
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Frame = +2
Query: 50 SRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDA 214
S + + V L + + +LE+AFS GP+R ++ N GFAFV+F D
Sbjct: 15 SPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDV 74
Query: 215 EDAIRGLDGRTICGRRARVEMS 280
AI +G T+ GRR V+ +
Sbjct: 75 NRAIELKNGSTVGGRRITVKQA 96
Score = 35.1 bits (77), Expect = 0.021
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRG 232
K+ + +L A +++ FS G + +V++ +N P GFAFV+F +DA +AI+
Sbjct: 332 KLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKK 391
Query: 233 LDGRTICGRR 262
+G + G+R
Sbjct: 392 FNGH-MFGKR 400
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 41.5 bits (93), Expect = 2e-04
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPL--RNVWVAR---NPPGFAFVEFEDPRDAEDAIRG 232
KI+VG + + + L +AFS YG + + V R GFAFV F +A +A++
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ- 93
Query: 233 LDGRTICGRRARV 271
LDG+ + GRR RV
Sbjct: 94 LDGQDLHGRRIRV 106
>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599, [Homo sapiens] GI:35770; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 432
Score = 41.5 bits (93), Expect = 2e-04
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +2
Query: 41 GIMSRYGDCKIYVGDLG-NNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAE 217
GI C + V +L ++ + +L + FS YG + + + RN P A V+ D AE
Sbjct: 237 GITGTNDRCTVLVSNLNADSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAE 296
Query: 218 DAIRGLDGRTICGRRARVEMS 280
A+ L G + G+R V S
Sbjct: 297 LAVHFLKGAMLFGKRLEVNFS 317
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 41.1 bits (92), Expect = 3e-04
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVA--RNPPGFAFVEFEDPRDAEDAIRGLDGR 244
+YV +L N + E+ D F YG +R + + + G AFV +ED DA++A+ L G
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHLSGF 80
Query: 245 TICGR 259
+ R
Sbjct: 81 NVANR 85
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 41.1 bits (92), Expect = 3e-04
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 250
+ + ++ S EL F YG +R + N F+E+ D RDAE A++ L+ I
Sbjct: 272 LVIFNVDTTVSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEI 331
Query: 251 CGRRARVEMS 280
G+ ++E+S
Sbjct: 332 GGKCIKLELS 341
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 41.1 bits (92), Expect = 3e-04
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 250
+ + ++ S EL F YG +R + N F+E+ D RDAE A++ L+ I
Sbjct: 285 LVIFNVDTTVSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEI 344
Query: 251 CGRRARVEMS 280
G+ ++E+S
Sbjct: 345 GGKCIKLELS 354
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 41.1 bits (92), Expect = 3e-04
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Frame = +2
Query: 50 SRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDA 214
++ G +YVGDL + +L +AF+ G + +V V R+ G+ +V + P+DA
Sbjct: 40 AQQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDA 99
Query: 215 EDAIRGLDGRTICGRRARVEMS 280
A+ L+ + GR RV S
Sbjct: 100 SRALNELNFMALNGRAIRVMYS 121
Score = 37.5 bits (83), Expect = 0.004
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN----PPGFAFVEFEDPRDAEDAIRGLD 238
+YV +L + S EL F +G + + R+ GF FV FE+ DA A+ L+
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALN 285
Query: 239 GRT 247
G+T
Sbjct: 286 GKT 288
Score = 35.1 bits (77), Expect = 0.021
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFA----FVEFEDPRDAEDAIRGLD 238
+YV +L + + +L + F+ +G + + V R+P G + FV F P +A AI ++
Sbjct: 329 LYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMN 388
Query: 239 GRTI 250
G+ I
Sbjct: 389 GKMI 392
Score = 34.7 bits (76), Expect = 0.027
Identities = 20/88 (22%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Frame = +2
Query: 20 ILFT*NSGIMSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP----PGFAF 187
++++ + + G I++ +L + L + FS +GP+ + VA +P G+ F
Sbjct: 118 VMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGF 177
Query: 188 VEFEDPRDAEDAIRGLDGRTICGRRARV 271
V+++ A+ AI L+G + ++ V
Sbjct: 178 VQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 40.7 bits (91), Expect = 4e-04
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLR-NVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRT 247
+YVG++ ++P L++ F+ GP+ + + ++ + FV + D R A AI L+GR
Sbjct: 61 VYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAILSLNGRH 120
Query: 248 ICGRRARV 271
+ G+ +V
Sbjct: 121 LFGQPIKV 128
Score = 37.5 bits (83), Expect = 0.004
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPL---RNVWVARN--PPGFAFVEFEDPRDAEDAIRGL 235
I+VGDL + L +FS + R +W + GF FV F + +DA+ AI +
Sbjct: 146 IFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 205
Query: 236 DGRTICGRRAR 268
+G+ + R+ R
Sbjct: 206 NGKWLSSRQIR 216
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 40.7 bits (91), Expect = 4e-04
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFS-------YYGPLRNVWVARN--PPGFAFVEFEDPRDAEDA 223
I+VGDL + L D+FS YY R +W + GF FV F + +DA+ A
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTA 209
Query: 224 IRGLDGRTICGRRAR 268
I ++G+ + R+ R
Sbjct: 210 INEMNGKWVSSRQIR 224
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 40.3 bits (90), Expect = 5e-04
Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 16/133 (12%)
Frame = +2
Query: 47 MSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFEDPRD 211
MS + + ++G L S L DAF YG L V + GF F+ F++ +
Sbjct: 1 MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60
Query: 212 AEDAIRG-----LDGRTICGRRARVEM------SNXXXXXXXXXXXXXXXXXXXXXXXXC 358
++AI LDGRTI +A+ ++ C
Sbjct: 61 MDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDRGRDRGYDRDRSRPSGGRGGGDC 120
Query: 359 YDCGDRGHYARDC 397
+ CG GH+AR+C
Sbjct: 121 FKCGKPGHFAREC 133
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 40.3 bits (90), Expect = 5e-04
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFEDPRDAEDAIRG 232
++YVG+L LE FS G + V + GF FV ++ ++ ++AI+
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 233 LDGRTICGRRARV 271
LDG + GR+ RV
Sbjct: 265 LDGADLDGRQIRV 277
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 39.9 bits (89), Expect = 7e-04
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAFVEFEDPRDAEDAIRGL 235
+YVG + + ++ +L FS YG + +V + R+ GFAF+ +ED R A+ L
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 236 DGRTICGRRARVE 274
+G + GR +V+
Sbjct: 98 NGALVLGRTIKVD 110
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 39.9 bits (89), Expect = 7e-04
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Frame = +2
Query: 50 SRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPG-----FAFVEFEDPRDA 214
SR+G +YVGDL + ++ +L D FS P+ +V + RN +A++ F+ P A
Sbjct: 18 SRFGS--LYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSA 75
Query: 215 EDAIRGLDGRTICGRRARVEMS 280
+A+ L+ + G+ R+ S
Sbjct: 76 SNAMTRLNHSDLKGKAMRIMWS 97
Score = 32.7 bits (71), Expect = 0.11
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN----PPGFAFVEFEDPRDAEDAIRGLD 238
+YV +L + L FS YG + +V V R+ GF FV F +P +A+ A+ L
Sbjct: 204 VYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLC 263
Query: 239 G 241
G
Sbjct: 264 G 264
Score = 32.3 bits (70), Expect = 0.15
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = +2
Query: 50 SRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN---PPGFAFVEFEDPRDAED 220
+R G +YV +L ++ + LE F +G + + V GF FV+F+ + A
Sbjct: 107 TRTGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVS 166
Query: 221 AIRGLDGRTICGRR 262
A L G + G++
Sbjct: 167 ARSALHGSMVYGKK 180
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 39.9 bits (89), Expect = 7e-04
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVAR----NPPGFAFVEFEDPRDAEDAIRGL 235
K++VG L N S+ E++ FS YG ++++ + R G F+++E A A+ L
Sbjct: 110 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 169
Query: 236 DGRTI 250
+GR I
Sbjct: 170 NGRHI 174
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 39.9 bits (89), Expect = 7e-04
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVAR----NPPGFAFVEFEDPRDAEDAIRGL 235
K++VG L N S+ E++ FS YG ++++ + R G F+++E A A+ L
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 160
Query: 236 DGRTI 250
+GR I
Sbjct: 161 NGRHI 165
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 39.5 bits (88), Expect = 0.001
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVAR----NPPGFAFVEFEDPRDAEDAIRGL 235
K++VG L N S+ E++ FS YG ++++ + R G AF+++E A A+ +
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 236 DGR 244
+G+
Sbjct: 167 NGK 169
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 39.5 bits (88), Expect = 0.001
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVAR----NPPGFAFVEFEDPRDAEDAIRGL 235
K++VG L N S+ E++ FS YG ++++ + R G AF+++E A A+ +
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 236 DGR 244
+G+
Sbjct: 167 NGK 169
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = +2
Query: 179 FAFVEFEDPRDAEDAIRGLDGRTICGRRARVEM 277
F FV ++ A++AI ++GR + G++ +V++
Sbjct: 392 FGFVSYDSQAAAQNAIDMMNGRHLGGKKLKVQL 424
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 39.5 bits (88), Expect = 0.001
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Frame = +2
Query: 41 GIMSRY--GDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPG----FAFVEFED 202
G++ Y G ++YVG+L N S+ +L F +G + V V R+ G F FV+F
Sbjct: 275 GMLGPYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFAR 334
Query: 203 PRDAEDAIRGLDGR-TICGRRARV 271
DA +A+ L+G+ I GR +V
Sbjct: 335 LEDARNAL-NLNGQLEIAGRAIKV 357
Score = 38.3 bits (85), Expect = 0.002
Identities = 17/52 (32%), Positives = 31/52 (59%)
Frame = +2
Query: 104 KPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTICGR 259
K ++++ S +G L +++V +N GF ++ FE+ + A A R L GR G+
Sbjct: 488 KEDVKEECSKFGKLNHIFVDKNSVGFVYLRFENAQAAIGAQRALHGRWFAGK 539
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 39.5 bits (88), Expect = 0.001
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPL---RNVWVARN--PPGFAFVEFEDPRDAEDAIRGL 235
I+VGDL + L D+FS + R +W + GF FV F + +DA+ AI +
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 209
Query: 236 DGRTICGRRAR 268
+G+ + R+ R
Sbjct: 210 NGKWVSSRQIR 220
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 39.5 bits (88), Expect = 0.001
Identities = 18/70 (25%), Positives = 33/70 (47%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 250
++V ++ +N EL F YG +R ++ GF + + D R A A+R L + +
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNKPL 229
Query: 251 CGRRARVEMS 280
R+ + S
Sbjct: 230 RRRKLDIHFS 239
Score = 38.7 bits (86), Expect = 0.002
Identities = 22/70 (31%), Positives = 36/70 (51%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 250
+ V +L + S +L F +G ++ + + FVEF D R AE A++ L+ I
Sbjct: 255 LVVFNLDPSISNDDLHGIFGAHGEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNRCEI 314
Query: 251 CGRRARVEMS 280
G+R +VE S
Sbjct: 315 AGKRIKVEPS 324
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 39.5 bits (88), Expect = 0.001
Identities = 18/70 (25%), Positives = 33/70 (47%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 250
++V ++ +N EL F YG +R ++ GF + + D R A A+R L + +
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNKPL 229
Query: 251 CGRRARVEMS 280
R+ + S
Sbjct: 230 RRRKLDIHFS 239
Score = 38.7 bits (86), Expect = 0.002
Identities = 22/70 (31%), Positives = 36/70 (51%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 250
+ V +L + S +L F +G ++ + + FVEF D R AE A++ L+ I
Sbjct: 255 LVVFNLDPSISNDDLHGIFGAHGEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNRCEI 314
Query: 251 CGRRARVEMS 280
G+R +VE S
Sbjct: 315 AGKRIKVEPS 324
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 39.5 bits (88), Expect = 0.001
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +2
Query: 65 CKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIR 229
C++YV ++ + +L D F +G + +V V+RNP G +V A+ AI
Sbjct: 108 CELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIA 167
Query: 230 GLDGRTICGRRARVEMS 280
LDG + GR RV S
Sbjct: 168 SLDGTEVGGREMRVRYS 184
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 39.1 bits (87), Expect = 0.001
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN----PPGFAFVEFEDPRDAEDAIRGLD 238
+YV +L + + +L++AF YG + + V ++ GF FV FE+ DA A+ L+
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 90
Query: 239 G 241
G
Sbjct: 91 G 91
Score = 36.7 bits (81), Expect = 0.007
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Frame = +2
Query: 53 RYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP----PGFAFVEFEDPRDAED 220
++ +YV +L + S +L++ FS +G + + V R+P G FV F P +A +
Sbjct: 128 KFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATE 187
Query: 221 AIRGLDGRTI 250
A+ L G+ I
Sbjct: 188 AMSQLSGKMI 197
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 39.1 bits (87), Expect = 0.001
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRG 232
++YVG+L + LE FS +G + V + GF FV D + +AI
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 233 LDGRTICGRRARVEMS 280
LDG+ + GR RV ++
Sbjct: 305 LDGQNLEGRAIRVNVA 320
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 39.1 bits (87), Expect = 0.001
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAFVEFEDPRDAEDAIRG 232
+I+VG L AS+ +L+ F + G + V + +NP G AF+ F A+ A++
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKE 274
Query: 233 LDGRTICGRRARVEMS 280
L I G++ V S
Sbjct: 275 LKSPMINGKKCGVTAS 290
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 39.1 bits (87), Expect = 0.001
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP----GFAFVEFEDPRDAEDAIRGLD 238
+Y GDL ++ L D F + + +V V R+ G+A++ F +P DA A+ L+
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALN 110
Query: 239 GRTICGRRARVEMSN 283
+ R R+ +SN
Sbjct: 111 YTPLFDRPIRIMLSN 125
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 39.1 bits (87), Expect = 0.001
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNV-WVARNPPGFAFVEFEDPRDAEDAIRGLDGRT 247
+YVG++ ++P L++ F+ GP+ + + + + FV + D R A AI L+GR
Sbjct: 56 VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSSYGFVHYFDRRSAGLAILSLNGRH 115
Query: 248 ICGRRARV 271
+ G+ +V
Sbjct: 116 LFGQPIKV 123
Score = 35.1 bits (77), Expect = 0.021
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYY---GPLRNVWVARN--PPGFAFVEFEDPRDAEDAIRGL 235
I+VGDL + L FS Y R +W + GF FV F + +DA+ AI +
Sbjct: 141 IFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEI 200
Query: 236 DGRTICGRRAR 268
G+ + R+ R
Sbjct: 201 TGKWLGSRQIR 211
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 38.7 bits (86), Expect = 0.002
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVA-----RNPPGFAFVEFEDPRDAEDAIRGL 235
+Y+G++ ++ +L + FS G ++ + + + P GF FV F D EDA++ +
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYI 95
Query: 236 DGRTICGRRARVE 274
G + R RV+
Sbjct: 96 SGTILDDRPIRVD 108
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 38.7 bits (86), Expect = 0.002
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Frame = +2
Query: 62 DCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAFVEFEDPRDAEDAI 226
D K+YVG+L N S+ +L F +GP+ V + +P GF F++F ++ A
Sbjct: 264 DRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQ 323
Query: 227 RGLDGR-TICGRRARV 271
L+G+ I GR +V
Sbjct: 324 IALNGKLEIAGRTIKV 339
Score = 33.5 bits (73), Expect = 0.063
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 104 KPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGR 244
+ ++ D S YGP+ +++V +N GF ++ F+ A A R + R
Sbjct: 458 RDDVADECSKYGPVNHIYVDKNSAGFVYLRFQSVEAAAAAQRAMHMR 504
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 38.7 bits (86), Expect = 0.002
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDA 223
+Y+G + + + E+E FS +G ++ V VARN F F++FEDP AE A
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIA 117
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 38.7 bits (86), Expect = 0.002
Identities = 22/63 (34%), Positives = 35/63 (55%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 250
I+VG + + +L FS +G + +V + G FV+F D + AEDAI L+G T+
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGK-GCGFVQFADRKSAEDAIESLNG-TV 380
Query: 251 CGR 259
G+
Sbjct: 381 IGK 383
Score = 31.9 bits (69), Expect = 0.19
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRGL 235
++VGDL + + L FS+ G + +V V RN G+ FVEF AE+ ++
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNY 169
Query: 236 DG 241
G
Sbjct: 170 SG 171
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 38.7 bits (86), Expect = 0.002
Identities = 20/30 (66%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +2
Query: 176 GFAFVEFEDPRDAEDAIRGLDGRTI-CGRR 262
G+AFV FED RDAEDAIR D T GRR
Sbjct: 10 GYAFVYFEDERDAEDAIRRTDNTTFGYGRR 39
Score = 29.1 bits (62), Expect = 1.4
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 110 ELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTICGRRARVE 274
++E F YG + NV + RN FAFV+F DA A+ + + VE
Sbjct: 85 DMERHFEPYGKVLNVRMRRN---FAFVQFATQEDATKALDSTHNSKLLDKVVSVE 136
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 38.3 bits (85), Expect = 0.002
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAF-SYYGPL-RNVWVARN---PPGFAFVEFEDPRDAEDAIRG 232
K+Y G+LG N + L+DAF G L V RN GF F+ FE + + A+
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279
Query: 233 LDGRTICGRRARVEMSN 283
++G + GR R+ +++
Sbjct: 280 MNGVEVEGRALRLNLAS 296
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 38.3 bits (85), Expect = 0.002
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Frame = +2
Query: 62 DCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAI 226
D +++ GDLGN + L AF+ + V R+ G+ FV F +P D A+
Sbjct: 136 DYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAAL 195
Query: 227 RGLDGRTICGRRARVEMSN 283
+ ++G+ + R ++ S+
Sbjct: 196 KEMNGKYVGNRPIKLRKSS 214
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 38.3 bits (85), Expect = 0.002
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRG 232
+ +VG L LE AF+ YG + + + + GF FV F+D + +DAI G
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 233 LDGRTICGRRARV 271
++G+ + GR V
Sbjct: 69 MNGQDLDGRSITV 81
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 38.3 bits (85), Expect = 0.002
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRG 232
+ +VG L LE AF+ YG + + + + GF FV F+D + +DAI G
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 233 LDGRTICGRRARV 271
++G+ + GR V
Sbjct: 69 MNGQDLDGRSITV 81
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 37.9 bits (84), Expect = 0.003
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVAR------NPPGFAFVEFEDPRDAEDAIR 229
KI+VG+L KPE E+ F +GP+ NV + + GF F+ + + A A+
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAVE 225
Query: 230 GLDGRTICGRRARVEMSN 283
DG GR V++ +
Sbjct: 226 -FDGVEFHGRILTVKLDD 242
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 37.5 bits (83), Expect = 0.004
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Frame = +2
Query: 53 RYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAE 217
RY K+Y+G L + L+DAFS + + V N G+ FV F A
Sbjct: 27 RYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSAN 86
Query: 218 DAIRGLDGRTICGRRARVEMS 280
AI ++G+ + G V ++
Sbjct: 87 SAISAMNGQELNGFNISVNVA 107
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 37.5 bits (83), Expect = 0.004
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-GFAFVEFEDPRDAEDAIRGLDGRT 247
++VG+L + + EL D F +G L ++ A P +AFV F DA AI L G
Sbjct: 25 LWVGNLPHGILERELADRFLRFGELESL--AFQPGRSYAFVNFNHDEDAFAAIESLQGFP 82
Query: 248 ICGRRARVEMS 280
+ G R+E +
Sbjct: 83 LSGNPLRIEFA 93
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 37.5 bits (83), Expect = 0.004
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 250
+ + +L S L F YGP++ + FVEF D RDA A ++G+ I
Sbjct: 215 LVIFNLDPEVSSITLRQIFQVYGPIKELRETPYKKHQRFVEFYDVRDAARAFDRMNGKEI 274
Query: 251 CGRRARVEMS 280
G++ +E S
Sbjct: 275 GGKQVVIEFS 284
Score = 31.5 bits (68), Expect = 0.25
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 134 YGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGR 244
YG +R V + R G V F D RDA+ A+R + GR
Sbjct: 129 YGDVRGVQMERISEGIVTVHFYDIRDAKRAVREVCGR 165
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 37.5 bits (83), Expect = 0.004
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP----GFAFVEFEDPRDAEDAIRGL 235
K+YV L +K E+ + FS YG + ++++A + G+AFV+F A AI+ L
Sbjct: 208 KLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKAL 267
Query: 236 DG 241
+G
Sbjct: 268 NG 269
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 37.5 bits (83), Expect = 0.004
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Frame = +2
Query: 44 IMSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPR 208
+ SR ++V + ++++ L AFS YG + V V + P GFA+V F
Sbjct: 14 LFSRSFSSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKE 73
Query: 209 DAEDAIRGLDGRTICGR 259
+AE A+ L+ + + GR
Sbjct: 74 EAEKALLELNAQLVDGR 90
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 37.5 bits (83), Expect = 0.004
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Frame = +2
Query: 53 RYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAE 217
R D +YVG L S+ L + F GP+ NV+V ++ + F+E+ DA+
Sbjct: 21 RNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDAD 80
Query: 218 DAIRGLDGRTICGRRARVEMSN 283
AI+ L+ + G+ RV ++
Sbjct: 81 YAIKVLNMIKLHGKPIRVNKAS 102
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 37.5 bits (83), Expect = 0.004
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAFVEFEDPRDAEDAIRGL 235
+YV L + ++ +LED F+ G + +V + +P GF F+ + DA IR L
Sbjct: 47 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 106
Query: 236 DGRTICGRRARVE 274
D + GR VE
Sbjct: 107 DHSVLQGRVITVE 119
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 37.5 bits (83), Expect = 0.004
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAFVEFEDPRDAEDAIRGL 235
+YV L + ++ +LED F+ G + +V + +P GF F+ + DA IR L
Sbjct: 77 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 136
Query: 236 DGRTICGRRARVE 274
D + GR VE
Sbjct: 137 DHSVLQGRVITVE 149
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 37.1 bits (82), Expect = 0.005
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +2
Query: 113 LEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTICGRRARVE 274
L F+ + L + P GF F+ FE DA+ A++ L+G+ + GR VE
Sbjct: 87 LRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVE 140
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 37.1 bits (82), Expect = 0.005
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRG 232
+IYVG+L + LE FS +G + + V + GF FV+ + + AI
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 233 LDGRTICGRRARVEMS 280
LDG+ + GR +V ++
Sbjct: 268 LDGQNLEGRAIKVNVA 283
Score = 26.2 bits (55), Expect = 9.5
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Frame = +2
Query: 62 DCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAI 226
+ K++VG+L + L F G + V N GF FV +AE A+
Sbjct: 112 EAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAV 171
Query: 227 RGLDGRTICGRRARV 271
+ + GRR V
Sbjct: 172 EKFNSFEVNGRRLTV 186
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 37.1 bits (82), Expect = 0.005
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFEDPRDAEDAIRG 232
KI+VG L + E F YGP+ +V + P GF FV F D DA D++
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSF-DSEDAVDSVLH 169
Query: 233 LDGRTICGRRARVE 274
+ G++ V+
Sbjct: 170 KTFHDLSGKQVEVK 183
Score = 32.3 bits (70), Expect = 0.15
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIR- 229
K++VG + + +L + F+ YG + V R+ P GF FV F DP + ++
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Query: 230 --GLDGRTICGRRA 265
+D R + +RA
Sbjct: 67 KHSIDTREVDVKRA 80
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 37.1 bits (82), Expect = 0.005
Identities = 30/117 (25%), Positives = 44/117 (37%), Gaps = 5/117 (4%)
Frame = +2
Query: 62 DCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-PPG----FAFVEFEDPRDAEDAI 226
D ++V L +L FS +G + + V R+ G +AF+EFE+ E A
Sbjct: 242 DNVLFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAY 301
Query: 227 RGLDGRTICGRRARVEMSNXXXXXXXXXXXXXXXXXXXXXXXXCYDCGDRGHYARDC 397
+D I RR V+ S C+ CG H A+DC
Sbjct: 302 FKMDNALIDDRRIHVDFSQ---SVSKLWSQFRQKDSQKGKGNGCFKCGSTDHIAKDC 355
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 36.7 bits (81), Expect = 0.007
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRG 232
K+++G + + + L++ F YG L + R+ GF F+ F DP AE I
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 75
Query: 233 ---LDGRTICGRRA 265
+DGRT+ ++A
Sbjct: 76 KHIIDGRTVEAKKA 89
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 36.7 bits (81), Expect = 0.007
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP----PGFAFVEFEDPRDAEDAIRGL 235
K++V ++ A+K EL FS +G ++++ + + G+AFVEF ++A +A + L
Sbjct: 670 KLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKAL 729
Query: 236 DGRTICGRRARVEMSN 283
GR +E +N
Sbjct: 730 ASTHFYGRHLVLEWAN 745
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 36.3 bits (80), Expect = 0.009
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Frame = +2
Query: 110 ELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRGLDGRTICGRRARVE 274
+L F+ YG + +V++ R+ GFAFV ++ +A A+ LDGR + GR V+
Sbjct: 31 DLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQ 90
Query: 275 MS 280
+
Sbjct: 91 FA 92
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 36.3 bits (80), Expect = 0.009
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Frame = +2
Query: 110 ELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRGLDGRTICGRRARVE 274
+L F+ YG + +V++ R+ GFAFV ++ +A A+ LDGR + GR V+
Sbjct: 31 DLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQ 90
Query: 275 MS 280
+
Sbjct: 91 FA 92
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 36.3 bits (80), Expect = 0.009
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRN--VWVARN---PPGFAFVEFEDPRDAEDAIRG 232
+I+VG L + +LE AFS +G + + + + R+ GF F+ F D R +++IR
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 233 LDGR 244
+ GR
Sbjct: 68 MHGR 71
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 35.9 bits (79), Expect = 0.012
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRG 232
K+++G + + + L D FS YG + + R+ GF F+ F DP +E I
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 233 ---LDGRTICGRRA 265
+DGRT+ ++A
Sbjct: 67 KHIIDGRTVEAKKA 80
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 35.9 bits (79), Expect = 0.012
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRG 232
K+++G + + + L D FS YG + + R+ GF F+ F DP +E I
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 233 ---LDGRTICGRRA 265
+DGRT+ ++A
Sbjct: 67 KHIIDGRTVEAKKA 80
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 35.9 bits (79), Expect = 0.012
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRG 232
K+++G + + + L D FS YG + + R+ GF F+ F DP +E I
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 233 ---LDGRTICGRRA 265
+DGRT+ ++A
Sbjct: 67 KHIIDGRTVEAKKA 80
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 35.9 bits (79), Expect = 0.012
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 250
+ + +L S L F YG ++ V FVEF D RDA A+R ++G+ I
Sbjct: 185 LVIMNLEPTVSSSTLRHIFQVYGEVKQVRETPCKREQRFVEFFDVRDAAKALRVMNGKVI 244
Query: 251 CGRRARVEMS 280
G+ ++ S
Sbjct: 245 SGKPMVIQFS 254
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 35.9 bits (79), Expect = 0.012
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = +2
Query: 56 YGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVAR-----NPPGFAFVEFEDPRDAED 220
Y K++VG + S+ L+ FS YG + VA+ P GF FV F + D
Sbjct: 3 YDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVK 62
Query: 221 AIR 229
A+R
Sbjct: 63 ALR 65
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 35.9 bits (79), Expect = 0.012
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRGL 235
++V L N ++ L++ F +G + +V +A + P G +VEF+ DAE A +
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 236 DGRTICGR 259
DG I G+
Sbjct: 160 DGAQIDGK 167
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 35.9 bits (79), Expect = 0.012
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRGL 235
++V L N ++ L++ F +G + +V +A + P G +VEF+ DAE A +
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 236 DGRTICGR 259
DG I G+
Sbjct: 160 DGAQIDGK 167
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 35.9 bits (79), Expect = 0.012
Identities = 20/67 (29%), Positives = 36/67 (53%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 250
++VG L + + L++ FS YG + +V + FV+F + AE+A+R L+G +
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAG-KRCGFVQFSEKSCAEEALRMLNGVQL 321
Query: 251 CGRRARV 271
G R+
Sbjct: 322 GGTTVRL 328
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 35.5 bits (78), Expect = 0.016
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY+CGD GH+ARDC
Sbjct: 134 CYNCGDTGHFARDC 147
Score = 33.9 bits (74), Expect = 0.048
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY CGD GH+ARDC
Sbjct: 200 CYTCGDVGHFARDC 213
Score = 32.3 bits (70), Expect = 0.15
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY CGD GH ARDC
Sbjct: 166 CYTCGDVGHVARDC 179
Score = 30.7 bits (66), Expect = 0.44
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY CG GH ARDC
Sbjct: 255 CYQCGGSGHLARDC 268
Score = 30.7 bits (66), Expect = 0.44
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY CG GH+AR+C
Sbjct: 282 CYKCGKEGHFAREC 295
Score = 29.9 bits (64), Expect = 0.77
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY CG GH ARDC
Sbjct: 232 CYSCGGVGHIARDC 245
Score = 29.5 bits (63), Expect = 1.0
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY+CG+ GH ++DC
Sbjct: 102 CYNCGELGHISKDC 115
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 35.5 bits (78), Expect = 0.016
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRGL 235
++VG++ +A++ +L + GP+ + + + P G+ F E++D A A R L
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 236 DGRTICGRRARVEMS 280
I GR+ RV+ +
Sbjct: 71 QSYEINGRQLRVDFA 85
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 34.7 bits (76), Expect = 0.027
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Frame = +2
Query: 38 SGIMSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFED 202
S + SR+ + + V +L + P+L + F +G + VA + GF FV F
Sbjct: 165 SDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVS 224
Query: 203 PRDAEDAIRGLDGRTICGRRARVEMS 280
DA+ AI L+G RVE S
Sbjct: 225 REDAQRAINKLNGYGYDNLILRVEWS 250
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 34.7 bits (76), Expect = 0.027
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Frame = +2
Query: 47 MSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRD 211
MS +C +Y+G++ S L D G + ++ + R+ P GFAF E+E
Sbjct: 1 MSGTSNCTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEI 60
Query: 212 AEDAIRGLDG 241
A+ A++ G
Sbjct: 61 ADYAVKLFSG 70
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 34.7 bits (76), Expect = 0.027
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Frame = +2
Query: 38 SGIMSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFED 202
S + R + + V +L + +P+L + F +G + V+VA + GF FV F
Sbjct: 204 SDMRRRNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVS 263
Query: 203 PRDAEDAIRGLDG 241
DA+ AI L+G
Sbjct: 264 REDAQRAINKLNG 276
>At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A /
spliceosomal protein U1A / U1snRNP-specific protein
identical to GB:Z49991 U1snRNP-specific protein
[Arabidopsis thaliana]
Length = 250
Score = 34.7 bits (76), Expect = 0.027
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDG 241
++V +L + + L+ F Y + V + PG AFVEF D + A++GL G
Sbjct: 179 LFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQG 235
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 34.3 bits (75), Expect = 0.036
Identities = 17/67 (25%), Positives = 34/67 (50%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 250
+ V +L ++ S EL YG ++ + + ++EF D R A A+ GL+G +
Sbjct: 304 LLVNNLDSSISNQELNRLVKSYGEVKEIRRTMHDNSQIYIEFFDVRAAAAALGGLNGLEV 363
Query: 251 CGRRARV 271
G++ ++
Sbjct: 364 AGKKLQL 370
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 34.3 bits (75), Expect = 0.036
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Frame = +2
Query: 65 CKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAI- 226
CK+++G + S+ L D F +G + + ++ GF FV F DP AE +
Sbjct: 6 CKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVL 65
Query: 227 --RGLDGRTICGRRA 265
+DG+ + ++A
Sbjct: 66 LKHIIDGKIVEAKKA 80
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 34.3 bits (75), Expect = 0.036
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Frame = +2
Query: 65 CKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAI- 226
CK+++G + S+ L D F +G + + ++ GF FV F DP AE +
Sbjct: 6 CKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVL 65
Query: 227 --RGLDGRTICGRRA 265
+DG+ + ++A
Sbjct: 66 LKHIIDGKIVEAKKA 80
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 33.9 bits (74), Expect = 0.048
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Frame = +2
Query: 38 SGIMSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFED 202
SG S G+ ++YVG+L LE+ F+ G + V + GF FV
Sbjct: 241 SGSGSGSGN-RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSS 299
Query: 203 PRDAEDAIRGLDGRTICGRRARV 271
++ + AI L+G + GR+ RV
Sbjct: 300 SQEVQKAINSLNGADLDGRQIRV 322
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 33.9 bits (74), Expect = 0.048
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Frame = +2
Query: 38 SGIMSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFED 202
SG S G+ ++YVG+L LE+ F+ G + V + GF FV
Sbjct: 249 SGSGSGSGN-RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSS 307
Query: 203 PRDAEDAIRGLDGRTICGRRARV 271
++ + AI L+G + GR+ RV
Sbjct: 308 SQEVQKAINSLNGADLDGRQIRV 330
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 33.9 bits (74), Expect = 0.048
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP----GFAFVEFEDPRDAEDAIRGLD 238
+Y+ +L + S+ L + F+ +G + ++ +A++ G+AFV F++P DA A ++
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVN 262
Query: 239 G 241
G
Sbjct: 263 G 263
Score = 29.5 bits (63), Expect = 1.0
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPG----FAFVEFEDPRDAEDAIRGLD 238
IYV ++ ++ EL FS G + + + + G F FV F P +A DA++
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFH 365
Query: 239 GRTICGR 259
G+ G+
Sbjct: 366 GQMFHGK 372
Score = 28.3 bits (60), Expect = 2.4
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPG-----FAFVEFEDPRDAEDAIRGL 235
+YVGDL + ++ L DAF+ + L +V + ++ + + F +DA AI
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 236 DGRTICGRRARVEMS 280
+ + G+ RV S
Sbjct: 86 NNSLLNGKMIRVMWS 100
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 33.5 bits (73), Expect = 0.063
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY CG+ GH+ARDC
Sbjct: 185 CYSCGESGHFARDC 198
Score = 31.1 bits (67), Expect = 0.34
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY CG+ GH ARDC
Sbjct: 131 CYKCGEPGHMARDC 144
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 33.5 bits (73), Expect = 0.063
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY CG+ GH+ARDC
Sbjct: 182 CYSCGESGHFARDC 195
Score = 27.9 bits (59), Expect = 3.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
C+ CG+ GH AR+C
Sbjct: 138 CFKCGEPGHMAREC 151
>At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing
protein similar to Tat-SF1 - Homo sapiens, GI:1667611;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 519
Score = 33.1 bits (72), Expect = 0.083
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 134 YGPLRNVWVARN-PPGFAFVEFEDPRDAEDAIRGLDGRTICGRRARVEMSN 283
+GP +V V + P G V F+D RDA+ I ++GR R+ + +
Sbjct: 440 HGPFDSVKVCEHHPQGVVLVRFKDRRDAQKCIEAMNGRWYAKRQIHASLDD 490
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 33.1 bits (72), Expect = 0.083
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRG 232
+ +VG L + +L+ FS +G + + + + GF FV F+D + DAI
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 233 LDGRTICGR 259
++G+ + GR
Sbjct: 67 MNGKELDGR 75
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 33.1 bits (72), Expect = 0.083
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRG 232
+ +VG L + +L+ FS +G + + + + GF FV F+D + DAI
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 233 LDGRTICGR 259
++G+ + GR
Sbjct: 67 MNGKELDGR 75
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 33.1 bits (72), Expect = 0.083
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRG 232
+ +VG L + +L+ FS +G + + + + GF FV F+D + DAI
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 233 LDGRTICGR 259
++G+ + GR
Sbjct: 67 MNGKELDGR 75
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 33.1 bits (72), Expect = 0.083
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Frame = +2
Query: 62 DCKIYVGDLGNNASKPELEDAFSYYGPLRNVWV-ARNPPG----FAFVEFEDPRDAEDAI 226
D I V DL NA+ +E F +GP++ + NP +AFVEFE+ A+ AI
Sbjct: 549 DAHIRVKDLPPNATVALVESVFKQFGPIKKGRIRVINPANSNYWYAFVEFEEADAAKRAI 608
Query: 227 R----GLDGRT 247
+ +DG T
Sbjct: 609 QASPLNVDGHT 619
Score = 31.5 bits (68), Expect = 0.25
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +2
Query: 113 LEDAFSYYGPLRNVWVARNPP--GFAFVEFEDPRDAEDAIRGLDGRTICGRRARVE 274
+EDA +GP+ + + ++ P FAFV+FE A AI R IC + V+
Sbjct: 761 IEDALKKFGPINAISIIKSGPLYKFAFVDFEKADVANRAIMASPVR-ICEKNVNVQ 815
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 33.1 bits (72), Expect = 0.083
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY CGD GH+ARDC
Sbjct: 132 CYMCGDVGHFARDC 145
Score = 31.5 bits (68), Expect = 0.25
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY+CG GH ARDC
Sbjct: 254 CYECGGTGHLARDC 267
Score = 30.3 bits (65), Expect = 0.59
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY CG GH+ARDC
Sbjct: 198 CYMCGGVGHFARDC 211
Score = 29.9 bits (64), Expect = 0.77
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY CG+ GH A+DC
Sbjct: 163 CYSCGEVGHLAKDC 176
Score = 28.7 bits (61), Expect = 1.8
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
C++CG+ GH A+DC
Sbjct: 96 CFNCGEVGHMAKDC 109
Score = 28.3 bits (60), Expect = 2.4
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
C+ CG GH+AR+C
Sbjct: 284 CFICGKEGHFAREC 297
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 32.7 bits (71), Expect = 0.11
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAI-- 226
K+++G + + ++ L++ FS +G + + ++ GF FV F DP AE I
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 227 -RGLDGRTICGRRA 265
+DGR + ++A
Sbjct: 67 KHNIDGRLVEAKKA 80
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 32.7 bits (71), Expect = 0.11
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAI-- 226
K+++G + + ++ L++ FS +G + + ++ GF FV F DP AE I
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 227 -RGLDGRTICGRRA 265
+DGR + ++A
Sbjct: 67 KHNIDGRLVEAKKA 80
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 32.7 bits (71), Expect = 0.11
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPG-----FAFVEFEDPRDAEDAIRGL 235
+YVG L + ++ L AF +G +++V + F FV F + DA A+ +
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 236 DGRTICGR 259
DG + GR
Sbjct: 75 DGAELYGR 82
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 32.3 bits (70), Expect = 0.15
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWV----ARNPPG--FAFVEFEDPRDAEDAIR 229
+YV +L ++ S E+E+ F +G ++ V ++ G +AFVEFED E+AI+
Sbjct: 259 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIK 317
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 32.3 bits (70), Expect = 0.15
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWV----ARNPPG--FAFVEFEDPRDAEDAIR 229
+YV +L ++ S E+E+ F +G ++ V ++ G +AFVEFED E+AI+
Sbjct: 318 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIK 376
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 32.3 bits (70), Expect = 0.15
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRG 232
K+++G + + + L + FS +G + V V R P GF FV F DP + ++
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66
Query: 233 ---LDGRTICGRRA 265
+D R + +RA
Sbjct: 67 KHHIDNRDVDVKRA 80
Score = 31.5 bits (68), Expect = 0.25
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFEDPRDAEDAIRG 232
KI+VG L + E F YGP+ + + + P GF FV F D D+ D +
Sbjct: 111 KIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSF-DSEDSVDLVLH 169
Query: 233 LDGRTICGRRARVE 274
+ G++ V+
Sbjct: 170 KTFHDLNGKQVEVK 183
>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative similar to
spliceosomal protein [Solanum tuberosum] GI:169589
Length = 232
Score = 32.3 bits (70), Expect = 0.15
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDG 241
+++ +L + + L+ F Y + + + PG AFVE+ED A A++ L G
Sbjct: 160 LFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQG 216
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 32.3 bits (70), Expect = 0.15
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRGL 235
++VGDL + + L FS+ + +V V RN G+ FVEF AE+A++
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSF 180
Query: 236 DGRTI 250
G T+
Sbjct: 181 SGVTM 185
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 31.9 bits (69), Expect = 0.19
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN----PPGFAFVEFEDPRDAEDAIRGLD 238
+Y+ +L S+ L FS +G + +A++ GFAF+EFE A A+ +D
Sbjct: 19 LYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAMLHMD 78
Query: 239 GRTI 250
GR I
Sbjct: 79 GRLI 82
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 31.9 bits (69), Expect = 0.19
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Frame = +2
Query: 44 IMSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAFVEFEDPR 208
+ R K++VG + A++ E+ F +G + V + ++ G FV++ +
Sbjct: 113 VSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSK 172
Query: 209 DAEDAIRGLDGR-TICGRRARVEM 277
DA+ AIR L + T+ G V++
Sbjct: 173 DADRAIRALHNQITLPGGTGPVQV 196
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 31.9 bits (69), Expect = 0.19
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Frame = +2
Query: 44 IMSRYGDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAFVEFEDPR 208
+ R K++VG + A++ E+ F +G + V + ++ G FV++ +
Sbjct: 113 VSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSK 172
Query: 209 DAEDAIRGLDGR-TICGRRARVEM 277
DA+ AIR L + T+ G V++
Sbjct: 173 DADRAIRALHNQITLPGGTGPVQV 196
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 31.9 bits (69), Expect = 0.19
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY CG GH+ARDC
Sbjct: 239 CYKCGKEGHWARDC 252
Score = 31.1 bits (67), Expect = 0.34
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY CG +GH++RDC
Sbjct: 306 CYKCGKQGHWSRDC 319
Score = 30.3 bits (65), Expect = 0.59
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY CG GH++RDC
Sbjct: 342 CYKCGKAGHWSRDC 355
Score = 28.3 bits (60), Expect = 2.4
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
C+ CG GH++RDC
Sbjct: 270 CFKCGKPGHWSRDC 283
>At3g21215.1 68416.m02681 RNA-binding protein, putative contains RNA
recognition motif, Pfam:PF00076; contains AT-AC splice
sites at intron 8
Length = 339
Score = 31.9 bits (69), Expect = 0.19
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-PGFAFVEFEDPRDAEDAIRGLDGRT 247
+++G+LG N ++ EL S + + + R F+EFED A + L G
Sbjct: 235 LFIGNLGENINEEELRSLLSAQPGFKQMKILRQERHTVCFIEFEDVNSATNVHHNLQGAV 294
Query: 248 I 250
I
Sbjct: 295 I 295
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 31.9 bits (69), Expect = 0.19
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRG 232
KI++G L + + F YG + + + R+ P GF F+ F DP + I
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE- 78
Query: 233 LDGRTICGRRARVE 274
D I G++ ++
Sbjct: 79 -DTHVINGKQVEIK 91
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 31.9 bits (69), Expect = 0.19
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRG 232
KI++G L + + F YG + + + R+ P GF F+ F DP + I
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE- 78
Query: 233 LDGRTICGRRARVE 274
D I G++ ++
Sbjct: 79 -DTHVINGKQVEIK 91
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 31.9 bits (69), Expect = 0.19
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = +2
Query: 59 GDCKIYVGDLGNNASKPELEDAFSYYGPLRNVWVAR-----NPPGFAFVEFEDPRDAEDA 223
G +I+VG L ++ ++ + +GPLR + + N G+AF ++DP + A
Sbjct: 373 GPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIA 432
Query: 224 IRGLDG 241
L+G
Sbjct: 433 CAALNG 438
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 31.5 bits (68), Expect = 0.25
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRGL 235
+++GDL + L FS G L +V V RN P G+ F+EF AE ++
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 236 DGRTICG 256
+G + G
Sbjct: 86 NGTQMPG 92
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 31.5 bits (68), Expect = 0.25
Identities = 20/30 (66%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
Frame = +2
Query: 197 EDPRDAEDAIRGLD----GRTICGRRARVE 274
ED RDAEDAIR LD GR GRR RVE
Sbjct: 2 EDERDAEDAIRALDRFEFGRK--GRRLRVE 29
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 31.5 bits (68), Expect = 0.25
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFEDPRDAEDAIRG 232
K++VG L + K + D F YG + + R G+ FV F +DA+ A R
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTF---KDAKAATRA 74
Query: 233 LDGRT--ICGRRARVEMSN 283
+ T I GRRA +++
Sbjct: 75 CEDSTPIINGRRANCNLAS 93
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 31.5 bits (68), Expect = 0.25
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY CG+ GH+AR+C
Sbjct: 327 CYRCGEEGHFAREC 340
Score = 27.5 bits (58), Expect = 4.1
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY C GH+AR+C
Sbjct: 358 CYRCNGSGHFAREC 371
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 31.1 bits (67), Expect = 0.34
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPG---FAFVEFEDPRDAEDAI 226
+YV D+ + ++ L FS G + + + +P FAFVEF D + A +A+
Sbjct: 143 VYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLRFAFVEFADDQGAHEAL 197
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 31.1 bits (67), Expect = 0.34
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDGRTI 250
++VG L ++ +L + F YG + + V + GFAF+ + +A A L G +
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITV-YSSRGFAFIYYRHVEEAVAAKEALQGANL 78
Query: 251 CG 256
G
Sbjct: 79 NG 80
>At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 228
Score = 31.1 bits (67), Expect = 0.34
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDG 241
+++ +L + L+ F Y + + + PG AFVE+ED + A++ L G
Sbjct: 156 LFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQG 212
>At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 229
Score = 31.1 bits (67), Expect = 0.34
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAIRGLDG 241
+++ +L + L+ F Y + + + PG AFVE+ED + A++ L G
Sbjct: 157 LFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQG 213
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 30.7 bits (66), Expect = 0.44
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN----PPGFAFVEFEDPRDAEDAIRGLD 238
++VG++ + E++ F G + V + + P GFA+VEF + ++A++ L+
Sbjct: 94 VFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQ-LN 152
Query: 239 GRTICGRRARV 271
+ GR+ +V
Sbjct: 153 ESELHGRQLKV 163
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 30.7 bits (66), Expect = 0.44
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRG 232
KI+VG L + E F YG + + + ++ P GF FV + D + I+
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ- 101
Query: 233 LDGRTICGRRARVE 274
D I G++ ++
Sbjct: 102 -DNHIIIGKQVEIK 114
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 30.7 bits (66), Expect = 0.44
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN----PPGFAFVEFEDPRDAEDAIRGLD 238
+YVG++ + E++ F G + V + + P GFA+VEF + ++A++ L+
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ-LN 149
Query: 239 GRTICGRRARV 271
+ GR+ +V
Sbjct: 150 ESELHGRQLKV 160
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 30.7 bits (66), Expect = 0.44
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN----PPGFAFVEFEDPRDAEDAIRGLD 238
+YVG++ + E++ F G + V + + P GFA+VEF + ++A++ L+
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ-LN 149
Query: 239 GRTICGRRARV 271
+ GR+ +V
Sbjct: 150 ESELHGRQLKV 160
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 30.7 bits (66), Expect = 0.44
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRGL 235
+YV L + +LE F+ G + + ++ P GFAFV +DAE I+ L
Sbjct: 74 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 133
Query: 236 DGRTICGR 259
+ + GR
Sbjct: 134 NQSVLEGR 141
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 30.7 bits (66), Expect = 0.44
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRGL 235
+YV L + +LE F+ G + + ++ P GFAFV +DAE I+ L
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 132
Query: 236 DGRTICGR 259
+ + GR
Sbjct: 133 NQSVLEGR 140
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 30.7 bits (66), Expect = 0.44
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPG---FAFVEFEDPRDAEDAI 226
+YV D+ + ++ L FS G + + + +P FAFVEF D + A A+
Sbjct: 130 VYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLRFAFVEFSDDQGARSAL 184
>At1g13450.1 68414.m01572 DNA binding protein GT-1 identical to DNA
binding protein GT-1 GI:598073 from [Arabidopsis
thaliana]
Length = 406
Score = 30.7 bits (66), Expect = 0.44
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 428 TSNDCVYAFESNRVHNALCHHNHSSGHHMDVVVAETAAEDH 306
T+N+ V +S+ HN HH H S +++ E++ EDH
Sbjct: 36 TTNESV-DLQSHHHHNHHNHHLHQSQPQQQILLGESSGEDH 75
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 30.3 bits (65), Expect = 0.59
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRGL 235
++V L + L AF+ +G + + V + GF FV + D+ I G+
Sbjct: 58 LFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGM 117
Query: 236 DGRTICG 256
DG+ + G
Sbjct: 118 DGKFLDG 124
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 30.3 bits (65), Expect = 0.59
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRGL 235
I+V ++ A+K L F+ +G + ++ +P G A++EF AE+A+ L
Sbjct: 518 IFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENAL-SL 576
Query: 236 DGRTICGRRARV 271
DG + R ++
Sbjct: 577 DGTSFMSRILKI 588
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 29.9 bits (64), Expect = 0.77
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGF----AFVEFEDPRDAEDAIRGLD 238
+YV L + P++ D F G + +V + G FVEF +A+ A+ +
Sbjct: 566 LYVCCLPRDTKMPDIIDFFKDVGQVVSVQLTTKRNGLRLSTGFVEFASANEAKKALDMKN 625
Query: 239 GRTICGRRARVEMSN 283
G +CG + + M++
Sbjct: 626 GEYLCGNKLILGMAS 640
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 29.9 bits (64), Expect = 0.77
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +2
Query: 164 RNPPGFAFVEFEDPRDAEDAIRGLDGRTICGRRARVEMS 280
+ P GF F EFE AIR L RTI G+ V ++
Sbjct: 241 KKPKGFGFYEFESAEGILRAIRLLTQRTIDGQELLVNVN 279
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 24.6 bits (51), Expect(2) = 0.94
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +2
Query: 74 YVGDLGNNASKPELEDAFSYYG 139
YVG+L ++ + +L++AFS +G
Sbjct: 11 YVGNLESDTEENDLKNAFSQFG 32
Score = 23.8 bits (49), Expect(2) = 0.94
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +2
Query: 179 FAFVEFEDPRDAEDAIRG 232
+ FV F+D + +DAI+G
Sbjct: 73 YGFVSFKDEKSMKDAIKG 90
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 29.5 bits (63), Expect = 1.0
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Frame = +2
Query: 59 GDCKIYVGDLGNNASKPELEDAFSYYGPLRNV-----WVARNPPGFAFVEFEDPRDAEDA 223
G ++VGDL + ELE YG ++ V + G+ VEF DP A
Sbjct: 232 GGAFLFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASAC 291
Query: 224 IRGLDGRTICGRRARVEMSN 283
L+G GR VE ++
Sbjct: 292 KDALNGYPFNGRPCVVEYAS 311
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 29.5 bits (63), Expect = 1.0
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARN----PPGFAFVEFEDPRDAEDAIRGLD 238
IYVG++ + E++ F G + V + + P GFA+VEF + ++++ L+
Sbjct: 105 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLI-LN 163
Query: 239 GRTICGRRARV 271
+ GR+ +V
Sbjct: 164 ESELHGRQIKV 174
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 29.5 bits (63), Expect = 1.0
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY+C +GH ARDC
Sbjct: 197 CYECKGKGHIARDC 210
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 29.5 bits (63), Expect = 1.0
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFEDPRDAEDAIRG 232
K+++ L S+ L AF +G L V + ++ G+AF+E+ A A++
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342
Query: 233 LDGRTICG 256
++G+ I G
Sbjct: 343 MNGKIING 350
>At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q10572 Sex determination
protein fox-1 (Feminizing locus on X protein 1)
{Caenorhabditis elegans}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 29.5 bits (63), Expect = 1.0
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVA--RNPPGFAFVEFEDPRDAEDAI 226
+Y+ +L + + + D F Y +R V + + G AFV +ED DA+ A+
Sbjct: 22 LYICNLPFSITSEDTYDLFGRYSTIRQVRIGCEKGTKGTAFVVYEDIYDAKKAV 75
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 29.5 bits (63), Expect = 1.0
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRDAEDAIRG 232
KI+VG L + L++AF +G + + V + GF FV ++ A +A++
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Query: 233 LDGRTICGR 259
+ + + GR
Sbjct: 97 MQNKELDGR 105
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 29.1 bits (62), Expect = 1.4
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Frame = +2
Query: 95 NASKPELEDAFSYYGPLRNVWVARNPPG----FAFVEFEDPRDAEDAIRGLDGRTICGRR 262
+ ++ L D FS G + +V + R G FA++ F ++A+DAI ++ I R
Sbjct: 13 HVTEERLRDVFSRKGEIADVKLKRKSDGKSRQFAYIGFRTEQEAQDAITYVNKCFIDTYR 72
Query: 263 ARVEMSN 283
VE+++
Sbjct: 73 ISVEVAD 79
>At4g38180.1 68417.m05390 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
contains Pfam:PF03101 domain: FAR1 family and PF04434:
SWIM zinc finger
Length = 788
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -2
Query: 161 PPIHFSKDHSKKMHLQVLACWRCFPNRQHRFCSRHSAT*C 42
PP+ + DH + ++ FP +HRFC H C
Sbjct: 358 PPVSITTDHDAVIRAAIM---HVFPGARHRFCKWHILKKC 394
>At4g01290.1 68417.m00170 expressed protein
Length = 991
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -2
Query: 410 YAFESNRVHNALCHHNHSSGH-HMDVVVAETAAEDHGRHNLVHH 282
+ F N +H HH +SGH D + + H + NL HH
Sbjct: 843 HRFPPNMIHRPPFHHTPTSGHPEFDRLPPHMMQKMHMQDNLQHH 886
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 29.1 bits (62), Expect = 1.4
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY CG GH+AR C
Sbjct: 36 CYKCGKLGHFARSC 49
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 29.1 bits (62), Expect = 1.4
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Frame = +2
Query: 59 GDCKIYVGDLGNNASKPELEDAFSYYGPLRNV-----WVARNPPGFAFVEFEDPRDAEDA 223
G+ ++VG+L + E+E S YG ++ + V+ G+ VEF D A
Sbjct: 200 GNTMLFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAAC 259
Query: 224 IRGLDGRTICGRRARVEMSN 283
G++G G+ V ++
Sbjct: 260 KEGMNGFIFNGKACVVAFAS 279
>At5g24440.1 68418.m02880 RNA-binding protein, putative
Length = 320
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPG---FAFVEFEDPRDAEDAIR 229
+YV D+ N ++ +L F G + + + + FAF+EF D A A+R
Sbjct: 139 VYVSDIDNQVTEEQLASLFLSCGQVVDCRMCGDYKSILRFAFIEFTDAEGARSALR 194
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 28.7 bits (61), Expect = 1.8
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRG 232
+ +VG L + +L+ FS +G + + + + GF FV F+D + DAI
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 233 LDG 241
++G
Sbjct: 67 MNG 69
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 28.7 bits (61), Expect = 1.8
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +2
Query: 101 SKPE-LEDAFSYYGPLRNVWVARNPP----GFAFVEFEDPRDAEDAIRGLDGRTICGRRA 265
S PE + F YG + ++ ++ + G F+E P +A A++ L+ GRR
Sbjct: 105 STPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRL 164
Query: 266 RVE 274
+V+
Sbjct: 165 KVD 167
>At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 427
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVA-------RNPPGFAFVEFEDPRDAEDAIR 229
I+V +L NA P+L + F +GP++ + NP F F+ FE + ++
Sbjct: 282 IFVANLPLNAMPPQLFELFKDFGPIKENGIQVRSSRGNANPVCFGFISFETVASVQSVLQ 341
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 28.7 bits (61), Expect = 1.8
Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRG 232
K+Y G+L N L + V V N GFAFV + D I
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145
Query: 233 LDGRTICGRRARVEMSN 283
LDG GR +V ++
Sbjct: 146 LDGTEYLGRALKVNFAD 162
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/73 (20%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Frame = +2
Query: 71 IYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAFVEFEDPRDAEDAIRGL 235
I V + + ++ +AF +G ++N+ + + G+A +E+E +A+ AI +
Sbjct: 97 ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAM 156
Query: 236 DGRTICGRRARVE 274
+G + + V+
Sbjct: 157 NGAELLTQNVSVD 169
>At5g33200.1 68418.m03919 hypothetical protein predicted replication
A1 proteins - Arabidopsis thaliana
Length = 426
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 176 GFAFVEFEDPRDAEDAIRGLDGRT 247
G +F E EDP D D +R L G+T
Sbjct: 294 GGSFNETEDPNDVPDGLRNLVGKT 317
>At2g33440.1 68415.m04099 splicing factor family protein similar to
Splicing factor U2AF 65 kDa subunit (U2 snRNP auxiliary
factor large subunit) {Homo sapiens} SP|P26368, {Mus
musculus} SP|P26369; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 247
Score = 28.3 bits (60), Expect = 2.4
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNV-WVARNP--PGFAFVEFEDPRDAEDAIRGLD 238
KI++G S L + S +GPL+ +V+ N AF+E+ D A GL+
Sbjct: 41 KIFIGGFSKAISSEMLMEIVSVFGPLKAYRFVSNNDLNQRCAFLEYTDGSVTLKACAGLN 100
Query: 239 GRTICG 256
G + G
Sbjct: 101 GMRLGG 106
>At2g06904.1 68415.m00778 hypothetical protein
Length = 217
Score = 28.3 bits (60), Expect = 2.4
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
C+ CG+ GHY +DC
Sbjct: 177 CFICGEDGHYPQDC 190
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 28.3 bits (60), Expect = 2.4
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
C+ CG GH ARDC
Sbjct: 114 CHSCGKSGHRARDC 127
Score = 26.6 bits (56), Expect = 7.2
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
C++CG RGH A +C
Sbjct: 231 CHNCGGRGHRAYEC 244
>At5g37510.2 68418.m04518 NADH-ubiquinone dehydrogenase,
mitochondrial, putative similar to NADH-ubiquinone
oxidoreductase 75 kDa subunit, mitochondrial from
Solanum tuberosum [SP|Q43644]
Length = 748
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = +2
Query: 101 SKPELED----AFSYYGPLRNVWVARNPPGFAFVEFEDPRDA 214
SKPEL+ A S P + RNP G A V F +P DA
Sbjct: 32 SKPELQSPESAAVSEPEPPTQILPPRNPVGGARVHFSNPEDA 73
>At5g37510.1 68418.m04517 NADH-ubiquinone dehydrogenase,
mitochondrial, putative similar to NADH-ubiquinone
oxidoreductase 75 kDa subunit, mitochondrial from
Solanum tuberosum [SP|Q43644]
Length = 745
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = +2
Query: 101 SKPELED----AFSYYGPLRNVWVARNPPGFAFVEFEDPRDA 214
SKPEL+ A S P + RNP G A V F +P DA
Sbjct: 32 SKPELQSPESAAVSEPEPPTQILPPRNPVGGARVHFSNPEDA 73
>At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein
contains Pfam profile: PF00098 zinc knuckle
Length = 262
Score = 27.9 bits (59), Expect = 3.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
C++CGD H AR+C
Sbjct: 88 CFNCGDMNHLARNC 101
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 27.9 bits (59), Expect = 3.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
C+ CG GH++RDC
Sbjct: 8 CFKCGRPGHWSRDC 21
>At5g53180.1 68418.m06611 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 429
Score = 27.5 bits (58), Expect = 4.1
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +2
Query: 80 GDLGNNASKPELEDAFSYYGPLRNVWVARNPPGF-AFVEFEDPRDAEDAIRGLDGRTI 250
GD S L FS +G + + G+ A V+F D A A LDGR+I
Sbjct: 119 GDDARMVSIDVLHLVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSI 176
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 27.5 bits (58), Expect = 4.1
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
C+ CG+ GHY DC
Sbjct: 161 CWICGEDGHYKNDC 174
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 27.5 bits (58), Expect = 4.1
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNV-----WVARNPPGFAFVEFEDPRDAEDAIR 229
KI+V LG + L DAF YG + + V+ G+ F+ F+ A +A++
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALK 187
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 27.5 bits (58), Expect = 4.1
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
C+ CG GH+A DC
Sbjct: 265 CFVCGQTGHFASDC 278
>At5g50240.1 68418.m06222 protein-L-isoaspartate
O-methyltransferase, putative / PIMT, putative similar
to SP|Q42539 Protein-L-isoaspartate O-methyltransferase
(EC 2.1.1.77) (Protein- beta-aspartate
methyltransferase) (PIMT) (Protein L-isoaspartyl
methyltransferase) (L-isoaspartyl protein carboxyl
methyltransferase) {Arabidopsis thaliana}; contains Pfam
profile PF01135: Protein-L-isoaspartate(D-aspartate)
O-methyltransferase (PCMT)
Length = 269
Score = 27.1 bits (57), Expect = 5.5
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Frame = -2
Query: 197 QILQKRNRVDFWPPIHFSKDHSKKMHLQVLAC--------WRCFPNRQHRFCSRHSAT*C 42
QI+++ R+D K KKM QVL C C P R HR+ S S++
Sbjct: 10 QIIREETRID-----KIIKKRKKKMRAQVLLCPTITAYGRLYCAPRRLHRYNSSSSSSQF 64
Query: 41 LN 36
LN
Sbjct: 65 LN 66
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 27.1 bits (57), Expect = 5.5
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY+CG++GH + C
Sbjct: 397 CYECGEKGHLSTAC 410
Score = 27.1 bits (57), Expect = 5.5
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY+CG++GH + C
Sbjct: 481 CYECGEKGHLSTAC 494
Score = 27.1 bits (57), Expect = 5.5
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY+CG++GH + C
Sbjct: 576 CYECGEKGHLSSAC 589
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 27.1 bits (57), Expect = 5.5
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +2
Query: 68 KIYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDPRDAEDAIRG 232
++Y+G + +A++ +L+ G + V + R G+AFV F A +AI
Sbjct: 93 EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDT 152
Query: 233 LDGRTICGRRAR 268
L+ G+R +
Sbjct: 153 LNNTDFRGKRIK 164
>At3g01150.1 68416.m00019 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Sus scrofa} SP|Q29099, {Mus musculus}
SP|P17225; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 125 FSYYGPLRNVWVARNPPGF-AFVEFEDPRDAEDAIRGLDGRTI 250
FS +G + + GF A V+F D A A LDGR+I
Sbjct: 133 FSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSALDGRSI 175
>At5g60780.1 68418.m07626 high-affinity nitrate transporter,
putative similar to trans-membrane nitrate transporter
protein AtNRT2:1 [Arabidopsis thaliana] GI:3747058,
high-affinity nitrate transporter ACH1 [Arabidopsis
thaliana] GI:3608362
Length = 539
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -2
Query: 191 LQKRNRVDFWPPIHFSKDHSKKMHLQVLACWRCF 90
+ +R + P+ F+K H + HL L+ + CF
Sbjct: 50 VDSEHRAKVFNPLSFAKPHMRAFHLGWLSFFTCF 83
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 26.6 bits (56), Expect = 7.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
C+ CG +GH RDC
Sbjct: 604 CFYCGKKGHCLRDC 617
>At4g40020.1 68417.m05666 hypothetical protein
Length = 615
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -2
Query: 377 LCHHNHSSGHHMDVVVAETAAEDHGRH 297
L HHNH+ H+ + ET + G H
Sbjct: 457 LAHHNHNHKHNKETSEEETKNANGGNH 483
>At3g08570.1 68416.m00994 phototropic-responsive protein, putative
similar to root phototropism RPT2 [Arabidopsis thaliana]
gi|6959488|gb|AAF33112, a signal transducer of
phototropic response PMID:10662859
Length = 612
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -2
Query: 431 ETSNDCVYAFESNRVHNALCHHN-HSSGHHMDVVVAETAAE 312
E DC Y E+ + ++CH + G MD +AE A +
Sbjct: 359 EYDEDCCYENETENLTGSMCHSSLLKVGRIMDAYLAEIAPD 399
>At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein,
chloroplast (DRT111) nearly identical to SP|P42698
DNA-damage-repair/toleration protein DRT111, chloroplast
precursor {Arabidopsis thaliana}; contains Pfam profiles
PF01585: G-patch domain, PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 387
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 185 FVEFEDPRDAEDAIRGLDGRTICGRRAR 268
FV+F P + A+ LDGR GR R
Sbjct: 336 FVQFSRPEETTKALVDLDGRYFGGRTVR 363
>At1g10520.1 68414.m01184 DNA polymerase lambda (POLL) identical to
DNA polymerase lambda GI:12053869 from [Arabidopsis
thaliana]
Length = 529
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 46 HVALWRLQNLCWRFGKQRQQART*RCIFLLWSFEKCMGGQKS 171
HV L+ L +FGK+R T R + W + G+K+
Sbjct: 61 HVLAMNLEALLHKFGKERLSHFTARLMLYQWLEDSLTSGEKA 102
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 26.2 bits (55), Expect = 9.5
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +2
Query: 356 CYDCGDRGHYARDC 397
CY+CGD GH C
Sbjct: 127 CYNCGDTGHSLSHC 140
>At3g45060.1 68416.m04857 high-affinity nitrate transporter,
putative similar to trans-membrane nitrate transporter
protein AtNRT2:1 [Arabidopsis thaliana] GI:3747058,
high-affinity nitrate transporter ACH1 [Arabidopsis
thaliana] GI:3608362
Length = 542
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = -2
Query: 191 LQKRNRVDFWPPIHFSKDHSKKMHLQVLACWRCF 90
+ +R + P+ F+K H + HL ++ + CF
Sbjct: 53 VDSEHRAKVFKPLSFAKPHMRAFHLGWISFFTCF 86
>At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4)
identical to WIP4 protein [Arabidopsis thaliana]
gi|18376500|emb|CAC86168; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 412
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -2
Query: 371 HHNHSSGHHMDVVVAETAAEDHG---RHNLVHH 282
HH+H ++V +A ++HG R N +HH
Sbjct: 208 HHDHHQDQGLEVTMASDHDDEHGGLQRGNHLHH 240
>At1g65670.1 68414.m07452 cytochrome P450 family protein similar to
Cytochrome P450 90A1 (SP:Q42569) [Arabidopsis thaliana]
Length = 482
Score = 26.2 bits (55), Expect = 9.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 116 QVLACWRCFPNRQHRF 69
++ CWRCFP+ RF
Sbjct: 196 ELALCWRCFPSGWFRF 211
>At1g60095.1 68414.m06771 jacalin lectin family protein contains
similarity to myrosinase-binding protein homolog
[Arabidopsis thaliana] GI:2997767;
Length = 531
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +2
Query: 143 LRNVWVARNPPGFAFVEFEDPRDAE 217
+RN+++ N G AFV+F +D++
Sbjct: 407 IRNIYIGHNKMGIAFVKFLYDKDSQ 431
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 26.2 bits (55), Expect = 9.5
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Frame = -2
Query: 278 TSLRERGVH-----ILYVHLNLGWRPQRHEDLQILQKRN 177
T+LR RG + IL V + G PQ E L +L++RN
Sbjct: 570 TNLRSRGSNLCDLAILVVDIMRGLEPQTIESLNLLRRRN 608
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,984,189
Number of Sequences: 28952
Number of extensions: 173359
Number of successful extensions: 878
Number of sequences better than 10.0: 207
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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