Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D23
         (566 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)          38   0.004
SB_27115| Best HMM Match : SAM_1 (HMM E-Value=1.7e-08)                 30   1.5  
SB_34976| Best HMM Match : N_methyl (HMM E-Value=1.7)                  29   2.0  
SB_44143| Best HMM Match : Tash_PEST (HMM E-Value=1.1)                 29   3.5  
SB_28941| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.8026e-45)     28   6.1  
SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_56318| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.016)             28   6.1  
SB_59367| Best HMM Match : VWA (HMM E-Value=0)                         27   8.1  
SB_42141| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  
SB_37753| Best HMM Match : zf-C2H2 (HMM E-Value=0.0023)                27   8.1  
SB_24809| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  
SB_14336| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.22)              27   8.1  

>SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)
          Length = 492

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 22/86 (25%), Positives = 44/86 (51%)
 Frame = +2

Query: 176 PEFLKLNPQHTVPTLVDDGLSIWESRAIITYLVNKYGKGSSLYPEDARARALVDQRLYFD 355
           PE+L +NP   VP +V +G +++ES   I ++   +    ++ P+D   RA    R++ D
Sbjct: 299 PEWLAINPNGLVPVIVHNGNAVYESSICIEFIDEAFSTPVTILPKDPYKRA--HGRMWGD 356

Query: 356 IGTLYQRFGDYFYPQVFAGAPADKEK 433
              + ++   +FY  +      D+E+
Sbjct: 357 F--VSKKLVPHFYTMLLKQDKEDQEE 380


>SB_27115| Best HMM Match : SAM_1 (HMM E-Value=1.7e-08)
          Length = 527

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +3

Query: 309 KTLERGRSSISACTLTLVPSTRDSEITSIRKYLPERLPTKRSWPRSRTLSSF--WTNSSM 482
           KTL+         T T+  + + S +   +  LPER  TK   PRS+TL S   +TNSSM
Sbjct: 66  KTLDHIEIQQGFKTFTIEDTIKPSSLKPPQ--LPER--TKLRKPRSKTLDSIPVYTNSSM 121

Query: 483 VKSTQP 500
           V    P
Sbjct: 122 VNLLYP 127


>SB_34976| Best HMM Match : N_methyl (HMM E-Value=1.7)
          Length = 177

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +3

Query: 249 RAPSSLTWSTSTVKAAASTQKTLERGRSSISACTLTLVPSTRDSEITSIRKYLPERLPT 425
           R P  ++ +T+T+         L    S+ +  T+     T +S ITS+   LP  LPT
Sbjct: 80  RVPRCISPTTATLTTETIAASQLTPSSSATTTTTIRTNTKTTESTITSLSTSLPVILPT 138


>SB_44143| Best HMM Match : Tash_PEST (HMM E-Value=1.1)
          Length = 613

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 248 SRAIITYLVNKYGKGSSLYPEDARARALVDQRLYFDIGTLY 370
           +R  I+Y+VN+YG  ++ Y E    +A     +Y D   +Y
Sbjct: 513 TRGGISYIVNRYGNANNKYIESYDEQAPSKYVMYLDADNVY 553


>SB_28941| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.8026e-45)
          Length = 2022

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -1

Query: 467  PKAGERPRSWPASLCRQALRQILADRSNLRISGRGYQCQSTSA 339
            PK   R + WP ++ RQ L +++A+  +  +S R   C ST A
Sbjct: 1567 PKESGR-KEWPIAVMRQVLEELIAETPSDLLS-RELWCSSTGA 1607


>SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2499

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 251  RAIITYLVNKYGKGSSLYPEDARARALVDQRLYFDIGTLY 370
            R  I+Y+ N+YG+ ++ Y E     A     +Y D   LY
Sbjct: 2089 RGGISYIANRYGEANNEYMESYDETAPSKYVMYLDANNLY 2128


>SB_56318| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.016)
          Length = 583

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 251 RAIITYLVNKYGKGSSLYPEDARARALVDQRLYFDIGTLY 370
           R  I+Y+ N+YG+ ++ Y E     A     +Y D   LY
Sbjct: 175 RGGISYIANRYGEANNEYMESYDETAPSKYVMYLDANNLY 214


>SB_59367| Best HMM Match : VWA (HMM E-Value=0)
          Length = 847

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 215 TLVDDGLSIWESRAIITYLVNKYGK 289
           T++D G S +  R II ++++KYG+
Sbjct: 452 TMLDSGESFFTMRNIIKHIISKYGR 476


>SB_42141| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +3

Query: 279 STVKAAASTQKTLERGRSSISACTLTLVPSTRDSEITSIRKYLPERLPTKRSWPRSRTLS 458
           +T+K + + + T     ++    T     +T+  E TSI+    E   T  ++  S T  
Sbjct: 16  TTIKPSTTDESTTNEASTAEFESTTAAQATTKTKEYTSIKPSNTEGSTTTEAYIHSATAE 75

Query: 459 -SFWTNSSMVKST 494
            +F    S VKST
Sbjct: 76  FTFTPTKSWVKST 88


>SB_37753| Best HMM Match : zf-C2H2 (HMM E-Value=0.0023)
          Length = 650

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 273 STSTVKAAASTQKTLERGRSSISACTLTLVPSTRDSEITSIRK 401
           STS    AASTQ+     + S++  + T +PST     +S  K
Sbjct: 379 STSLQHTAASTQRMSSGSKGSLALSSHTTLPSTSQQPSSSTSK 421


>SB_24809| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 780

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
 Frame = +3

Query: 255 PSSLTWSTSTVKAAASTQKTLERGRSSISACTLTLVPSTRDSEI-TSIRKYLPERLPTKR 431
           PS  T  TST      T +TL    S +   T T +PS    E  T++      +  T  
Sbjct: 180 PSPTTRGTSTAIPTPMTWQTLAAIPSPMVRQTSTAIPSPMAKETSTAMPSPTTRQTSTAI 239

Query: 432 SWPRSRTLSSFWTNSSMVKSTQPALI*P*LT*ASSQACPA 551
             P SR +S+  T S M   T  A+  P +   +S A P+
Sbjct: 240 PLPMSRQISAVIT-SPMAMQTSTAIPSP-MAMQTSTAIPS 277


>SB_14336| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.22)
          Length = 774

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 251 RAIITYLVNKYGKGSSLYPEDARARALVDQRLYFDIGTLY 370
           R  I+Y+ N+Y K ++ Y E     A     +Y D   LY
Sbjct: 302 RGGISYIANRYSKANNKYMESYDETAPSKYFMYLDANNLY 341


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,175,646
Number of Sequences: 59808
Number of extensions: 302285
Number of successful extensions: 1054
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)