Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_D22
(420 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 230 3e-61
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 48 3e-06
SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015) 38 0.003
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.29
SB_49646| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.29
SB_38850| Best HMM Match : ResIII (HMM E-Value=0.045) 30 0.68
SB_23107| Best HMM Match : ResIII (HMM E-Value=0.045) 30 0.68
SB_3900| Best HMM Match : DUF1070 (HMM E-Value=1) 30 0.68
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.89
SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 29 1.2
SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25) 29 1.2
SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_30566| Best HMM Match : zf-C4_Topoisom (HMM E-Value=0.38) 29 2.1
SB_51982| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16) 29 2.1
SB_21811| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.7e-06) 29 2.1
SB_13788| Best HMM Match : rve (HMM E-Value=0.00016) 29 2.1
SB_6095| Best HMM Match : 7tm_1 (HMM E-Value=0.013) 28 2.7
SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 28 3.6
SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11) 28 3.6
SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10) 28 3.6
SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05) 28 3.6
SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20) 28 3.6
SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29) 28 3.6
SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_17484| Best HMM Match : Pox_A32 (HMM E-Value=0.025) 28 3.6
SB_8103| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_47012| Best HMM Match : ScdA_N (HMM E-Value=5.3) 27 4.8
SB_1587| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_56699| Best HMM Match : ResIII (HMM E-Value=0.053) 27 6.3
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_19250| Best HMM Match : SOCS_box (HMM E-Value=1) 27 8.3
SB_15632| Best HMM Match : CBM_5_12 (HMM E-Value=2.9) 27 8.3
SB_4087| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_3096| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_58114| Best HMM Match : DUF1478 (HMM E-Value=3) 27 8.3
SB_51131| Best HMM Match : ResIII (HMM E-Value=0.36) 27 8.3
SB_26806| Best HMM Match : Annexin (HMM E-Value=0) 27 8.3
SB_20319| Best HMM Match : IncA (HMM E-Value=0.2) 27 8.3
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 230 bits (563), Expect = 3e-61
Identities = 102/137 (74%), Positives = 121/137 (88%)
Frame = +1
Query: 10 GDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCH 189
GDNVGFNVKNVSVK+++RG VAGD KNNPP+ FTAQVIV+NHPG+I GY+PVLDCH
Sbjct: 164 GDNVGFNVKNVSVKDIKRGNVAGDFKNNPPKPCKSFTAQVIVMNHPGEIHAGYSPVLDCH 223
Query: 190 TAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 369
TAHIACKF ++ EK+DRR+GK EDNPK IK+GDAA+V ++PSKP+CVE+F EFPPLGRF
Sbjct: 224 TAHIACKFDKLLEKIDRRSGKKLEDNPKMIKTGDAAMVEMIPSKPMCVETFTEFPPLGRF 283
Query: 370 AVRDMRQTVADGVIKAV 420
AVRDM+QTVA GVIK+V
Sbjct: 284 AVRDMKQTVAVGVIKSV 300
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 48.0 bits (109), Expect = 3e-06
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +1
Query: 232 VDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRD 381
+D++TGK + P+ IK AI L +C+E F +F +GRF +RD
Sbjct: 496 IDKKTGKKGQTRPRFIKQDQIAIARLETQGVICIEKFSDFQQMGRFTLRD 545
>SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)
Length = 80
Score = 38.3 bits (85), Expect = 0.003
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +1
Query: 295 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVADGVI 411
A V L S+P+CVE ++++ LGRF +R T+A GVI
Sbjct: 40 AEVELQTSRPVCVELYKDYKDLGRFMLRYGGNTIAAGVI 78
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 31.5 bits (68), Expect = 0.29
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = +1
Query: 4 RGGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGY 168
R G + + + ELRRG V D P R F A V +L HP IS +
Sbjct: 375 RAGQSASAALSGIERHELRRGMVMTDPSLEP-RACMCFWADVYLLFHPAAISKRF 428
>SB_49646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 624
Score = 31.5 bits (68), Expect = 0.29
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +1
Query: 169 TPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVE 336
TPVL TAH+ K ++ + D P ++KS ++VN V S L E
Sbjct: 223 TPVLRIKTAHVTDKDNRVRSVLIIDNISQAPDTPATLKSSSDSVVNSVGSVGLVAE 278
>SB_38850| Best HMM Match : ResIII (HMM E-Value=0.045)
Length = 382
Score = 30.3 bits (65), Expect = 0.68
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -3
Query: 403 RRRPSASCHARRNDRGVGIPGRTPHTGAWR--EPG*QWR 293
RR P +A+ G+ + R P G WR +PG +WR
Sbjct: 131 RRPPGVHRYAKAAPSGIKLVERNPRYGEWRHKKPGYEWR 169
>SB_23107| Best HMM Match : ResIII (HMM E-Value=0.045)
Length = 418
Score = 30.3 bits (65), Expect = 0.68
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -3
Query: 403 RRRPSASCHARRNDRGVGIPGRTPHTGAWR--EPG*QWR 293
RR P +A+ G+ + R P G WR +PG +WR
Sbjct: 167 RRPPGVHRYAKAAPSGIKLVERNPRYGEWRHKKPGYEWR 205
>SB_3900| Best HMM Match : DUF1070 (HMM E-Value=1)
Length = 500
Score = 30.3 bits (65), Expect = 0.68
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -3
Query: 403 RRRPSASCHARRNDRGVGIPGRTPHTGAWR--EPG*QWR 293
RR P +A+ G+ + R P G WR +PG +WR
Sbjct: 178 RRPPGVHRYAKAAPSGIKLVERNPRYGEWRHKKPGYEWR 216
>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1887
Score = 29.9 bits (64), Expect = 0.89
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +2
Query: 197 T*PANLPKSKRKSTVVLVNQQRTTLNPLNLVMPP 298
T PA P + RK+T Q RTT P PP
Sbjct: 1459 TVPATKPPTTRKTTTATTTQGRTTRKPTTTAEPP 1492
>SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 903
Score = 29.5 bits (63), Expect = 1.2
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 301 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 390
+++VP++P CV SF EF + +RD+ Q
Sbjct: 380 MSVVPAQPQCVASFPEFCAVSVSYIRDLSQ 409
>SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)
Length = 1097
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 407 TPSATVCLMSRTAKRPRGGNSWKDSTHRGLEG 312
TPS VCL+SR + PR W R + G
Sbjct: 282 TPSLYVCLLSRAHRDPRLSTGWSPYEKREVRG 313
>SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 695
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = +1
Query: 196 HIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKP 324
HIA K E+K D ++ K+ + PK++ SGD ++VP++P
Sbjct: 74 HIAKKL-EVK---DSQSSKNNDLYPKTVPSGDIGTDSVVPNQP 112
>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 650
Score = 28.7 bits (61), Expect = 2.1
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +2
Query: 242 VLVNQQRTTLNPLNLVMPPLSTWFPPSPCVWSPSRNSHP 358
+ + +Q + P PP ++PP+P + P++ S+P
Sbjct: 163 LFILRQHPSYPPTQPFYPPTQPFYPPTPSSYPPTQPSYP 201
>SB_30566| Best HMM Match : zf-C4_Topoisom (HMM E-Value=0.38)
Length = 597
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -3
Query: 379 HARRNDRGVGIPGRTPHTGAWR--EPG*QWR 293
+A+ GV + GR P G WR PG +WR
Sbjct: 19 YAKAVPSGVKLVGRNPRYGEWRHKRPGYEWR 49
>SB_51982| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 28.7 bits (61), Expect = 2.1
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 250 KSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPP--LGRFAVRDMRQTVAD 402
KST+DN S S A V SK + V S +E PP + R V ++Q D
Sbjct: 57 KSTKDNGNSKGSSSRASERGVGSKQVSVSSLKEAPPRVVKRHTVSSLQQFKLD 109
>SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16)
Length = 3999
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 306 VDNGGITRFNGFRVVLC*FTSTTVDFLFDFGKFAG 202
VDN G+ N F V++C T+D++FD + +G
Sbjct: 1700 VDNAGMYAENAFTVLVC--DRNTIDYIFDEVQLSG 1732
>SB_21811| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.7e-06)
Length = 925
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Frame = -1
Query: 135 HNDLRCEVCSSPGWVVFRISC------NVTTAQFLDRYVFD 31
H ++C VC GW + R+ C + TT Q ++FD
Sbjct: 172 HRRVKCSVCKKVGWSMDRLVCETCGLRSFTTVQAFSDWLFD 212
>SB_13788| Best HMM Match : rve (HMM E-Value=0.00016)
Length = 508
Score = 28.7 bits (61), Expect = 2.1
Identities = 24/75 (32%), Positives = 36/75 (48%)
Frame = +2
Query: 8 AVTMLVSTSKTYLSRNCAVVTLQEIRKTTHPGELQTSQRKSLC*ITQVKYQTDTHLYWIA 187
+VT+ VST T LS T++ R TH Q+S+ S C +Q + Q D L W +
Sbjct: 24 SVTLEVSTL-TALSAYYEGATVERRRAHTH----QSSENLSCCRRSQEECQVDERLIWSS 78
Query: 188 TQPT*PANLPKSKRK 232
P + +K+K
Sbjct: 79 RCTKKPPSKEAAKKK 93
>SB_6095| Best HMM Match : 7tm_1 (HMM E-Value=0.013)
Length = 872
Score = 28.3 bits (60), Expect = 2.7
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = +3
Query: 141 SPRSNIKRIHTCIGLPHSPHSLQICR 218
SP+ KR T GLP S HSL CR
Sbjct: 537 SPKMKKKRPKTGEGLPGSKHSLDSCR 562
>SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 904
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 301 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 390
++++P++P CV SF EF + +RD+ Q
Sbjct: 381 MSVMPAQPQCVASFPEFCAVSVSYIRDLLQ 410
>SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11)
Length = 1175
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 301 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 390
+++ P++P CV SF EF + +RD+ Q
Sbjct: 385 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 414
>SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10)
Length = 549
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 301 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 390
+++ P++P CV SF EF + +RD+ Q
Sbjct: 389 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 418
>SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
Length = 1131
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 301 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 390
+++ P++P CV SF EF + +RD+ Q
Sbjct: 1044 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 1073
>SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 887
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 301 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 390
+++ P++P CV SF EF + +RD+ Q
Sbjct: 532 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 561
>SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20)
Length = 1285
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 301 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 390
+++ P++P CV SF EF + +RD+ Q
Sbjct: 1111 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 1140
>SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29)
Length = 605
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 301 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 390
+++ P++P CV SF EF + +RD+ Q
Sbjct: 184 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 213
>SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 988
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 301 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 390
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 301 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 390
+++ P++P CV SF EF + +RD+ Q
Sbjct: 87 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 116
>SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 301 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 390
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 301 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 390
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_17484| Best HMM Match : Pox_A32 (HMM E-Value=0.025)
Length = 1616
Score = 27.9 bits (59), Expect = 3.6
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -2
Query: 206 QAMWAVWQSNTGVYPFDI*PG*FSTMTCAVKSA-APLGGLFFESPA 72
Q +AVW + G + + PG +ST + V+S+ A GG E+ A
Sbjct: 78 QLNFAVWCATAGCFTSTLPPGGYSTSSAPVRSSIAGAGGPAMEAQA 123
>SB_8103| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1071
Score = 27.5 bits (58), Expect = 4.8
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -3
Query: 379 HARRNDRGVGIPGRTPHTGAWR--EPG*QWR 293
+A++ GV + R+P G WR +PG +WR
Sbjct: 657 YAKKVPSGVKLVERSPRYGEWRHKKPGYEWR 687
>SB_47012| Best HMM Match : ScdA_N (HMM E-Value=5.3)
Length = 840
Score = 27.5 bits (58), Expect = 4.8
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -3
Query: 379 HARRNDRGVGIPGRTPHTGAWR--EPG*QWR 293
+A++ GV + R+P G WR +PG +WR
Sbjct: 659 YAKKVPSGVKLVERSPRYGEWRHKKPGYEWR 689
>SB_1587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1497
Score = 27.1 bits (57), Expect = 6.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 128 TCAVKSAAPLGGLFFESPAT*PRRNSLTDTFLTLKPTLSPP 6
T V + + L G ++ T P +S +DT LT+ T+ PP
Sbjct: 1081 TFRVNTPSVLLGYEYQKRTTGPGTSSRSDTLLTMFVTIEPP 1121
>SB_56699| Best HMM Match : ResIII (HMM E-Value=0.053)
Length = 314
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -3
Query: 385 SCHARRNDRGVGIPGRTPHTGAWR--EPG*QWR 293
S +A+ GV + R P G WR +PG +WR
Sbjct: 71 SIYAKAVPSGVKLVERNPRYGEWRHKKPGYEWR 103
>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3367
Score = 27.1 bits (57), Expect = 6.3
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -2
Query: 269 GLSSVDLPVRRSTFSL-ISANLQAMWAVWQS 180
G++++ LP ST + NLQ W +WQS
Sbjct: 2463 GITTIPLPSSSSTPIIDFEVNLQGEWILWQS 2493
>SB_19250| Best HMM Match : SOCS_box (HMM E-Value=1)
Length = 252
Score = 26.6 bits (56), Expect = 8.3
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Frame = +2
Query: 44 LSRNCAVVTLQEIRKTTHPGELQTSQRKSLC*ITQVKYQTDTHLYWIATQPT-------- 199
LS +C + L HPG L +S RKS I QV L ++ + T
Sbjct: 135 LSLSCKSIVLILQVYCPHPGSLLSSSRKSTVLIPQVYCPYPASLLSLSCKSTVLIPQVYC 194
Query: 200 -*PANLPKSKRKSTVVL 247
PA+L S RKS V++
Sbjct: 195 PYPASLLSSSRKSIVLI 211
>SB_15632| Best HMM Match : CBM_5_12 (HMM E-Value=2.9)
Length = 748
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -3
Query: 379 HARRNDRGVGIPGRTPHTGAWR--EPG*QWR 293
+A+ GV + R P G WR PG +WR
Sbjct: 640 YAKEISNGVKLVERNPRYGEWRHKRPGYEWR 670
>SB_4087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1095
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -3
Query: 379 HARRNDRGVGIPGRTPHTGAWR--EPG*QWR 293
+A+ GV + R P G WR PG +WR
Sbjct: 640 YAKEISNGVKLVERNPRYGEWRHKRPGYEWR 670
>SB_3096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 994
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -3
Query: 379 HARRNDRGVGIPGRTPHTGAWR--EPG*QWR 293
+A+ GV + R P G WR PG +WR
Sbjct: 551 YAKAEPSGVKLVERNPRYGEWRHKRPGYEWR 581
>SB_58114| Best HMM Match : DUF1478 (HMM E-Value=3)
Length = 231
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 301 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 390
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFFAVSVSYIRDILQ 32
>SB_51131| Best HMM Match : ResIII (HMM E-Value=0.36)
Length = 738
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -3
Query: 379 HARRNDRGVGIPGRTPHTGAWR--EPG*QWR 293
+A+ GV I R P G WR +PG +WR
Sbjct: 447 YAKAVPSGVKIVERNPRYGEWRHKKPGYEWR 477
>SB_26806| Best HMM Match : Annexin (HMM E-Value=0)
Length = 829
Score = 26.6 bits (56), Expect = 8.3
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 181 DCHTAHIACKFAE-IKEKVDRRTGKSTEDNPKSIKSGD 291
D T + A K + IKE+ ++ G S ED+ K SGD
Sbjct: 77 DARTLYFAMKNIDSIKEEYQKKYGCSLEDDVKEETSGD 114
>SB_20319| Best HMM Match : IncA (HMM E-Value=0.2)
Length = 566
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 108 CRLHSASHCAKSPRSNIKRIHTCIGLPHSPHSLQICRNQRE 230
C++ +A H SP + IH G H+ +I QRE
Sbjct: 345 CKIRAAEHLVASPSAPDGEIHIVEGTAHTYRLQKISAIQRE 385
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.135 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,132,074
Number of Sequences: 59808
Number of extensions: 380466
Number of successful extensions: 1275
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1271
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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