Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_D22
(420 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 216 4e-57
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 216 4e-57
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 216 4e-57
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 216 4e-57
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 138 1e-33
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 72 1e-13
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 59 1e-09
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 33 0.059
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 32 0.14
At4g27900.2 68417.m04005 expressed protein 32 0.18
At4g27900.1 68417.m04004 expressed protein 32 0.18
At1g45160.1 68414.m05177 protein kinase family protein contains ... 31 0.42
At5g63950.1 68418.m08030 SNF2 domain-containing protein / helica... 30 0.55
At1g28280.1 68414.m03471 VQ motif-containing protein contains PF... 29 0.97
At5g11940.1 68418.m01396 subtilase family protein contains simil... 29 1.7
At2g21450.1 68415.m02552 SNF2 domain-containing protein / helica... 28 2.2
At5g57160.1 68418.m07140 DNA ligase IV identical to DNA ligase I... 27 5.2
At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD) i... 27 5.2
At5g38560.1 68418.m04662 protein kinase family protein contains ... 27 6.8
At5g55390.1 68418.m06901 hydroxyproline-rich glycoprotein family... 26 9.0
At5g53770.1 68418.m06681 nucleotidyltransferase family protein c... 26 9.0
At5g15500.2 68418.m01815 ankyrin repeat family protein contains ... 26 9.0
At5g15500.1 68418.m01814 ankyrin repeat family protein contains ... 26 9.0
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ... 26 9.0
At4g11590.1 68417.m01857 F-box family protein contains weak hit ... 26 9.0
At3g44350.1 68416.m04765 no apical meristem (NAM) family protein... 26 9.0
At2g41140.1 68415.m05081 calcium-dependent protein kinase, putat... 26 9.0
At1g22670.1 68414.m02833 protease-associated zinc finger (C3HC4-... 26 9.0
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 216 bits (528), Expect = 4e-57
Identities = 95/137 (69%), Positives = 119/137 (86%)
Frame = +1
Query: 10 GDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCH 189
GDNVGFNVKNV+VK+L+RGYVA +SK++P +GAA+FT+QVI++NHPGQI NGY PVLDCH
Sbjct: 293 GDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCH 352
Query: 190 TAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 369
T+HIA KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRF
Sbjct: 353 TSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRF 412
Query: 370 AVRDMRQTVADGVIKAV 420
AVRDMRQTVA GVIK+V
Sbjct: 413 AVRDMRQTVAVGVIKSV 429
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 216 bits (528), Expect = 4e-57
Identities = 95/137 (69%), Positives = 119/137 (86%)
Frame = +1
Query: 10 GDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCH 189
GDNVGFNVKNV+VK+L+RGYVA +SK++P +GAA+FT+QVI++NHPGQI NGY PVLDCH
Sbjct: 293 GDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCH 352
Query: 190 TAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 369
T+HIA KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRF
Sbjct: 353 TSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRF 412
Query: 370 AVRDMRQTVADGVIKAV 420
AVRDMRQTVA GVIK+V
Sbjct: 413 AVRDMRQTVAVGVIKSV 429
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 216 bits (528), Expect = 4e-57
Identities = 95/137 (69%), Positives = 119/137 (86%)
Frame = +1
Query: 10 GDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCH 189
GDNVGFNVKNV+VK+L+RGYVA +SK++P +GAA+FT+QVI++NHPGQI NGY PVLDCH
Sbjct: 293 GDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCH 352
Query: 190 TAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 369
T+HIA KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRF
Sbjct: 353 TSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRF 412
Query: 370 AVRDMRQTVADGVIKAV 420
AVRDMRQTVA GVIK+V
Sbjct: 413 AVRDMRQTVAVGVIKSV 429
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 216 bits (528), Expect = 4e-57
Identities = 95/137 (69%), Positives = 119/137 (86%)
Frame = +1
Query: 10 GDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCH 189
GDNVGFNVKNV+VK+L+RGYVA +SK++P +GAA+FT+QVI++NHPGQI NGY PVLDCH
Sbjct: 293 GDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCH 352
Query: 190 TAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 369
T+HIA KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRF
Sbjct: 353 TSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRF 412
Query: 370 AVRDMRQTVADGVIKAV 420
AVRDMRQTVA GVIK+V
Sbjct: 413 AVRDMRQTVAVGVIKSV 429
>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
domain-containing protein similar to SP|P13905
Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
thaliana}; contains Pfam profile PF03143: Elongation
factor Tu C-terminal domain
Length = 104
Score = 138 bits (335), Expect = 1e-33
Identities = 60/95 (63%), Positives = 76/95 (80%)
Frame = +1
Query: 136 LNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVP 315
+NH GQI NGYTPVLDCHT+HIA KF+EI K+D RTG E PK +K+ +AAI+N+ P
Sbjct: 1 MNHLGQIKNGYTPVLDCHTSHIAVKFSEILTKIDWRTGHEIEKEPKFLKNSEAAIINMTP 60
Query: 316 SKPLCVESFQEFPPLGRFAVRDMRQTVADGVIKAV 420
+KP+ VE++ +PPLGRFA+RDMRQTV GVIK+V
Sbjct: 61 TKPMVVEAYSAYPPLGRFAIRDMRQTVGVGVIKSV 95
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 72.1 bits (169), Expect = 1e-13
Identities = 37/136 (27%), Positives = 68/136 (50%), Gaps = 2/136 (1%)
Frame = +1
Query: 10 GDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLN--HPGQISNGYTPVLD 183
G+N+ + + +++ G+V S NP +F AQ+ +L + GY +L
Sbjct: 388 GENLRVRITGIEDEDILSGFVLS-SIVNPVPAVTEFVAQLQILELLDNAIFTAGYKAILH 446
Query: 184 CHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLG 363
H C+ E+K ++D +T K + +K+G A + + + +C+E F +FP LG
Sbjct: 447 IHAVVEECEIIELKSQIDLKTRKPMKKKVLFVKNGAAVVCRIQVTNSICIEKFSDFPQLG 506
Query: 364 RFAVRDMRQTVADGVI 411
RF +R +T+A G +
Sbjct: 507 RFTLRTEGKTIAVGKV 522
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 59.3 bits (137), Expect = 1e-09
Identities = 38/140 (27%), Positives = 65/140 (46%)
Frame = +1
Query: 1 ARGGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVL 180
AR GDNV ++ + ++ G V + P A V+VL I G
Sbjct: 525 ARAGDNVALALQGIDANQVMAGDVLCHP-DFPVSVATHLELMVLVLEGATPILLGSQLEF 583
Query: 181 DCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 360
H A A ++ +D +TG+ T+ +P+ + + +A++ + P+CVE+F E L
Sbjct: 584 HVHHAKEAATVVKLVAMLDPKTGQPTKKSPRCLTAKQSAMLEVSLQNPVCVETFSESRAL 643
Query: 361 GRFAVRDMRQTVADGVIKAV 420
GR +R +TVA G + +
Sbjct: 644 GRVFLRSSGRTVAMGKVTRI 663
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 33.5 bits (73), Expect = 0.059
Identities = 32/140 (22%), Positives = 58/140 (41%)
Frame = +1
Query: 1 ARGGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVL 180
A GDNVG ++ + +++RG V + P F A + VL + ++P
Sbjct: 346 ALAGDNVGLLLRGIQKADIQRGMVLAKPGSITPH--TKFEAIIYVLKK--EEGGRHSPFF 401
Query: 181 DCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 360
+ + ++ KV + E++ K + GD + + P+ E
Sbjct: 402 AGYRPQFYMRTTDVTGKVTKIMNDKDEES-KMVMPGDRVKIVVELIVPVACEQGM----- 455
Query: 361 GRFAVRDMRQTVADGVIKAV 420
RFA+R+ +TV GVI +
Sbjct: 456 -RFAIREGGKTVGAGVIGTI 474
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 32.3 bits (70), Expect = 0.14
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 2/141 (1%)
Frame = +1
Query: 4 RGGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLD 183
+ GDNVG ++ + ++++RG V +K + F A++ VL +T
Sbjct: 330 QAGDNVGLLLRGLKREDIQRGMVI--AKPGSCKTYKKFEAEIYVLTK--DEGGRHTAFFS 385
Query: 184 CHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGD--AAIVNLVPSKPLCVESFQEFPP 357
+ + A+I KV+ +N K + GD A+ L+ PL E+ Q
Sbjct: 386 NYRPQFYLRTADITGKVE------LPENVKMVMPGDNVTAVFELIMPVPL--ETGQ---- 433
Query: 358 LGRFAVRDMRQTVADGVIKAV 420
RFA+R+ +TV GV+ V
Sbjct: 434 --RFALREGGRTVGAGVVSKV 452
>At4g27900.2 68417.m04005 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.18
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 268 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 360
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At4g27900.1 68417.m04004 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.18
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 268 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 360
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At1g45160.1 68414.m05177 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 1067
Score = 30.7 bits (66), Expect = 0.42
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +1
Query: 166 YTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESF- 342
Y P CH AC E++ R S +D K IK + N SK + ++SF
Sbjct: 82 YKPKYSCHPPKYACSSTTSSEEIKLRGKNSGKDEEKMIKISE---TNPPCSKSMGIKSFS 138
Query: 343 QEFPPLG 363
E P G
Sbjct: 139 HELGPRG 145
>At5g63950.1 68418.m08030 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|Q03468
Excision repair protein ERCC-6 (Cockayne syndrome
protein CSB) {Homo sapiens}; contains PFam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1090
Score = 30.3 bits (65), Expect = 0.55
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -1
Query: 417 SLYYTVGDRLPHVTHGETTEGWEFLEGLHTQGLGGNQVDNGGI 289
+L YT+ ++ + + EG +L LHTQG GG D+ G+
Sbjct: 364 NLSYTLPGKIATMLYPHQREGLNWLWSLHTQGKGGILGDDMGL 406
>At1g28280.1 68414.m03471 VQ motif-containing protein contains
PF05678: VQ motif
Length = 247
Score = 29.5 bits (63), Expect = 0.97
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 269 LNPLNLVMPPLSTWFPP-SPCVWSPSRNSHPSVVSPCVT 382
+NPLN V P+++ F P P + SPS PS+V VT
Sbjct: 140 INPLNPVFNPVNSAFSPRKPEILSPSILDFPSLVLSPVT 178
>At5g11940.1 68418.m01396 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 from [Oryza
sativa]
Length = 762
Score = 28.7 bits (61), Expect = 1.7
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -1
Query: 411 YYTVGDRLPHVTHGETTEGWEFLEGLHTQGLGGNQVDNG 295
Y + + LPH TH +T G F+ + G G + G
Sbjct: 217 YMSARESLPHGTHVASTAGGSFVSNVSDNGFGVGTIRGG 255
>At2g21450.1 68415.m02552 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|Q61687
Transcriptional regulator ATRX {Mus musculus}; contains
PFam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain
Length = 816
Score = 28.3 bits (60), Expect = 2.2
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 214 QICRLCGLCGNPIQVCIRLIF 152
++CR+CGL PI+ I ++F
Sbjct: 197 EVCRVCGLIKKPIESMIEVVF 217
>At5g57160.1 68418.m07140 DNA ligase IV identical to DNA ligase IV
GI:9651815 from [Arabidopsis thaliana]; identical to
cDNA DNA ligase IV, GI:9651814
Length = 1219
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Frame = +1
Query: 238 RRTGKSTEDNP---KSIKSGDAAIVNLVPSK 321
++ +ST+DNP KS K G+ V+LVPS+
Sbjct: 610 QKESESTQDNPKVNKSSKRGEKKNVSLVPSQ 640
>At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD)
identical to Homeobox protein LUMINIDEPENDENS
(Swiss-Prot:Q38796) [Arabidopsis thaliana]
Length = 953
Score = 27.1 bits (57), Expect = 5.2
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 250 KSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 360
K+++ +P GD+ IV P KPL + S ++ PP+
Sbjct: 447 KNSKKDPLPSAIGDSKIV--APEKPLALHSAKDSPPI 481
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 293 PPLSTWFPPSPCVWSPSRNSHPSVVSPCVT 382
PP+ + PP P V SP +S P P +T
Sbjct: 49 PPVVSSSPPPPVVSSPPPSSSPPPSPPVIT 78
>At5g55390.1 68418.m06901 hydroxyproline-rich glycoprotein family
protein
Length = 1332
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 248 VNQQRTTLNPLNLVMPPLSTW 310
VN++ L NLV PPLS W
Sbjct: 899 VNEEDKQLEDWNLVPPPLSLW 919
>At5g53770.1 68418.m06681 nucleotidyltransferase family protein
contains Pfam domains PF03828: PAP/25A associated
domain, PF01909: Nucleotidyltransferase domain
Length = 530
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 208 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCV 333
KF E K + E+ PK+ + A+ L P +PLC+
Sbjct: 223 KFVEKKSNIAFDLSFDMENGPKAAEFIQDAVSKLPPLRPLCL 264
>At5g15500.2 68418.m01815 ankyrin repeat family protein contains
Pfam domain, PF00023: Ankyrin repeat
Length = 457
Score = 26.2 bits (55), Expect = 9.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 39 RICQGIAPWLRCRRFEKQPTQGSCRLHSASH 131
R+CQ A W+ R ++ G+ LH A++
Sbjct: 169 RLCQKDAEWIETRVINRRDKDGNTPLHLAAY 199
>At5g15500.1 68418.m01814 ankyrin repeat family protein contains
Pfam domain, PF00023: Ankyrin repeat
Length = 351
Score = 26.2 bits (55), Expect = 9.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 39 RICQGIAPWLRCRRFEKQPTQGSCRLHSASH 131
R+CQ A W+ R ++ G+ LH A++
Sbjct: 63 RLCQKDAEWIETRVINRRDKDGNTPLHLAAY 93
>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
subunit (RPB205) (RPII) (RPB1) nearly identical to
P|P18616 DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) {Arabidopsis thaliana}
Length = 1840
Score = 26.2 bits (55), Expect = 9.0
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 194 PT*PANLPKSKRKSTVVLVNQQRTTLNPLNLVMPPLSTWFPPSPCVWSPSRNSH 355
PT P+ P+S + S + + L+P + P + P SP +SP+ S+
Sbjct: 1722 PTSPSYNPQSAKYSPSIAYSPSNARLSPASPYSPTSPNYSPTSPS-YSPTSPSY 1774
>At4g11590.1 68417.m01857 F-box family protein contains weak hit to
Pfam PF00646: F-box domain
Length = 397
Score = 26.2 bits (55), Expect = 9.0
Identities = 18/67 (26%), Positives = 28/67 (41%)
Frame = +1
Query: 55 LRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKV 234
+ GY NP G + +V + Q GY PV D + + C +KEK+
Sbjct: 130 ISHGYGLEKFITNPSTGKSTVLGRVQTNSKVAQCFLGYDPVNDEYKLLVLC----MKEKM 185
Query: 235 DRRTGKS 255
R G++
Sbjct: 186 QRHDGRT 192
>At3g44350.1 68416.m04765 no apical meristem (NAM) family protein
Tobacco elicitor-responsive gene (TERN), NAC-domain
protein, Nicotiana tabacum, EMBL:AB021178
Length = 228
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -2
Query: 323 GLE-GTRLTMAASPDLMDLGLSSVDLPVRRSTFS 225
G+E +R T++ SP+ G + VDLPV +T +
Sbjct: 172 GVETSSRATISTSPETSHSGGNQVDLPVNATTIT 205
>At2g41140.1 68415.m05081 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calcium/calmodulin-dependent
protein kinase CaMK3 [Nicotiana tabacum]
gi|16904226|gb|AAL30820
Length = 576
Score = 26.2 bits (55), Expect = 9.0
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 205 CKFAEIKEKVDRRTGKSTEDNPKSI 279
CK E+ +K+ +R GK +ED+ K +
Sbjct: 207 CKGGELLDKILQRGGKYSEDDAKKV 231
>At1g22670.1 68414.m02833 protease-associated zinc finger
(C3HC4-type RING finger) family protein contains Pfam
domain, PF02225: protease-associated (PA) domain and
Pfam domain, PF00097: Zinc finger, C3HC4 type (RING
finger); similar to ReMembR-H2 protein JR702
[Arabidopsis thaliana] gi|6942149|gb|AAF32326
Length = 422
Score = 26.2 bits (55), Expect = 9.0
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Frame = +1
Query: 175 VLDC-HTAHIACKFAEIKE-----KVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVE 336
VL C H H+AC + + V +R ++T D P + +S ++ S +C++
Sbjct: 247 VLPCSHKFHVACVDSWLISWRTFCPVCKRDARTTADEPLATESTPFLSSSIATSSLVCID 306
Query: 337 SFQEFPPLG 363
S PPLG
Sbjct: 307 S----PPLG 311
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.135 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,960,134
Number of Sequences: 28952
Number of extensions: 254300
Number of successful extensions: 912
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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