Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D21
         (182 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2R0F8 Cluster: Putative uncharacterized protein; n=1; ...    31   6.6  
UniRef50_A2Y297 Cluster: Putative uncharacterized protein; n=2; ...    31   6.6  
UniRef50_A0CEN0 Cluster: Chromosome undetermined scaffold_172, w...    30   8.7  

>UniRef50_Q2R0F8 Cluster: Putative uncharacterized protein; n=1;
           Oryza sativa (japonica cultivar-group)|Rep: Putative
           uncharacterized protein - Oryza sativa subsp. japonica
           (Rice)
          Length = 331

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 14  RHPSWSRNA-IVSLFIYFQQWNTFKI 88
           RHPSWSR A I+  +IY+  W   K+
Sbjct: 55  RHPSWSRGAGILQRYIYWAPWMVEKL 80


>UniRef50_A2Y297 Cluster: Putative uncharacterized protein; n=2;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. indica (Rice)
          Length = 402

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 14  RHPSWSRNA-IVSLFIYFQQWNTFKI 88
           RHPSWSR A I+  +IY+  W   K+
Sbjct: 262 RHPSWSRGAGILQRYIYWAPWMVEKL 287


>UniRef50_A0CEN0 Cluster: Chromosome undetermined scaffold_172,
           whole genome shotgun sequence; n=4; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_172,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 2514

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 155 AILFTVVDYNTQTNKNKTPSSFKF*MCSIVENK*INSLSRFETKMDAS 12
           AIL  ++ +NTQ+  NK+  +FK    S ++N  +  +S F  +   S
Sbjct: 758 AILILMICHNTQSTYNKSEDTFKHEFSSKIDNLQLEFISHFNYRFICS 805


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,349,374
Number of Sequences: 1657284
Number of extensions: 2266752
Number of successful extensions: 3562
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3561
length of database: 575,637,011
effective HSP length: 40
effective length of database: 509,345,651
effective search space used: 10186913020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)