Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D21
         (182 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    22   9.3  
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    22   9.3  
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc...    22   9.3  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    22   9.3  

>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 117 CLSIIINNGEKDCTERY 167
           CL +++N G+   TE+Y
Sbjct: 143 CLRLLVNYGDHVLTEKY 159


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 97  VHLNFKCVPLLKINK 53
           V + FKC+PL K N+
Sbjct: 252 VDIFFKCIPLFKNNE 266


>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 150

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 98  LVFYFYLFEYYNQQR*KGLHGTLP 169
           L+F+F++    N++R K    T+P
Sbjct: 46  LIFFFFIIGIINRRRTKKGQATIP 69


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -1

Query: 140 VVDYNTQTNKNKTPSSFKF 84
           ++D ++ ++KN T +SFKF
Sbjct: 438 LLDRDSTSSKNSTRTSFKF 456


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 710,237
Number of Sequences: 5004
Number of extensions: 10315
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 41
effective length of database: 2,157,314
effective search space used: 40988966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)