Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D21
         (182 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0548 + 24864868-24865455                                         31   0.17 
10_08_0007 + 14044844-14045767                                         26   3.7  

>11_06_0548 + 24864868-24865455
          Length = 195

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 14  RHPSWSRNA-IVSLFIYFQQWNTFKI 88
           RHPSWSR A I+  +IY+  W   K+
Sbjct: 55  RHPSWSRGAGILQRYIYWAPWMVEKL 80


>10_08_0007 + 14044844-14045767
          Length = 307

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 167 VAFRAILFTVVDYNTQTNKNKTPSSFKF 84
           V F  IL  ++DY T+TN   TP++ KF
Sbjct: 53  VRFDFILAFIIDYTTETNP-PTPTNGKF 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,077,618
Number of Sequences: 37544
Number of extensions: 51889
Number of successful extensions: 66
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 14,793,348
effective HSP length: 40
effective length of database: 13,291,588
effective search space used: 265831760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)