Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D21
         (182 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer am...    27   2.3  
U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer am...    27   2.3  
U53155-9|AAC48273.1|  328|Caenorhabditis elegans Seven tm recept...    26   3.1  
AC006744-1|AAF60506.2|  328|Caenorhabditis elegans Serpentine re...    26   4.1  
U42844-4|ABM01868.1|  739|Caenorhabditis elegans Hypothetical pr...    25   5.4  

>U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer
            amphipath transporters(subfamily iv p-type atpase)
            protein 4, isoform a protein.
          Length = 1212

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 17   HPSWSRNAIVSLFIYFQQWNTFKI*MNLVFYFYLFEYYN 133
            H  WS   + + F+YF   N      N VF  + +++YN
Sbjct: 983  HGHWSYYRLANTFLYFLYKNA-----NAVFIIFYYQFYN 1016


>U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer
            amphipath transporters(subfamily iv p-type atpase)
            protein 4, isoform b protein.
          Length = 1454

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 17   HPSWSRNAIVSLFIYFQQWNTFKI*MNLVFYFYLFEYYN 133
            H  WS   + + F+YF   N      N VF  + +++YN
Sbjct: 983  HGHWSYYRLANTFLYFLYKNA-----NAVFIIFYYQFYN 1016


>U53155-9|AAC48273.1|  328|Caenorhabditis elegans Seven tm receptor
           protein 138 protein.
          Length = 328

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 54  LFIFNNGTHLKFK*TWCFIFICL 122
           LFI  NG+ L+   TW F  +CL
Sbjct: 68  LFILMNGSFLRHSLTWGFHLMCL 90


>AC006744-1|AAF60506.2|  328|Caenorhabditis elegans Serpentine
           receptor, class t protein52 protein.
          Length = 328

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 180 LIIYGSVPCNPFHRC 136
           L+IYGSV  NP + C
Sbjct: 4   LLIYGSVQANPLYNC 18


>U42844-4|ABM01868.1|  739|Caenorhabditis elegans Hypothetical
           protein C08A9.3 protein.
          Length = 739

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 102 CFIFICLSIIINNGEKDCTERY 167
           CF+FICL   I++  KD  +++
Sbjct: 714 CFLFICLMDFIDSNIKDVPKKH 735


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,842,281
Number of Sequences: 27780
Number of extensions: 56476
Number of successful extensions: 92
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 12,740,198
effective HSP length: 41
effective length of database: 11,601,218
effective search space used: 220423142
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)