Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D21
         (182 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   1.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   1.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    20   3.1  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    20   3.1  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    19   4.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    19   5.5  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    19   7.2  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    19   7.2  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 38  AIVSLFIYFQQWNTFKI*MNLVFYFYLFEY 127
           A+V +  YF  W   K    +V++  LF Y
Sbjct: 214 AVVWIMCYFCIWKGVKWTGKVVYFTSLFPY 243


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 38  AIVSLFIYFQQWNTFKI*MNLVFYFYLFEY 127
           A+V +  YF  W   K    +V++  LF Y
Sbjct: 267 AVVWIMCYFCIWKGVKWTGKVVYFTSLFPY 296


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
          protein.
          Length = 459

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -2

Query: 40 RVSRPRWMPLTLV 2
          +V  P+++PLTL+
Sbjct: 21 KVRGPKYLPLTLI 33


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 143 TVVDYNTQTNKN 108
           T VDY TQ N+N
Sbjct: 308 TGVDYFTQINRN 319


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 35  NAIVSLFIYFQQWNTF 82
           NAI+ LF+ +  W  F
Sbjct: 223 NAIMGLFVLWWGWLAF 238


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = -1

Query: 146 FTVVDYNTQTNKNK 105
           FT++ Y T   K K
Sbjct: 209 FTIIGYETNDRKEK 222


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = +3

Query: 99  WCFIFICLSI 128
           W  + +CLSI
Sbjct: 4   WLLLIVCLSI 13


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 5/11 (45%), Positives = 7/11 (63%)
 Frame = +3

Query: 96  TWCFIFICLSI 128
           TW  + +CL I
Sbjct: 3   TWLLLVVCLGI 13


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,680
Number of Sequences: 438
Number of extensions: 603
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 40
effective length of database: 128,823
effective search space used:  2576460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)