Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D21
         (182 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26070.1 68418.m03102 hydroxyproline-rich glycoprotein family...    25   5.3  
At5g35270.1 68418.m04181 cytochrome P-450 aromatase-related simi...    25   7.0  
At2g05870.1 68415.m00636 cytochrome P-450 aromatase-related simi...    25   7.0  
At1g61740.1 68414.m06963 expressed protein contains Pfam profile...    25   7.0  
At2g28180.1 68415.m03422 cation/hydrogen exchanger, putative (CH...    25   9.3  
At2g01710.1 68415.m00099 DNAJ heat shock N-terminal domain-conta...    25   9.3  
At1g32610.1 68414.m04024 hydroxyproline-rich glycoprotein family...    25   9.3  

>At5g26070.1 68418.m03102 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965; similar to root nodule extensin
           [Pisum sativum] gi|15021750|gb|AAK77902; Common family
           members: At5g19800, At5g57070, At1g72790 [Arabidopsis
           thaliana]
          Length = 102

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 173 SMVAFRAILFTVVDYNTQTNKNKTPSSFK 87
           ++V   AILFTV + N      KTP++++
Sbjct: 9   TLVFLLAILFTVAEANNNRKLLKTPTNYQ 37


>At5g35270.1 68418.m04181 cytochrome P-450 aromatase-related similar
           to minor outer capsid protein VP4 (GI:13446784) [Human
           rotavirus C]; similar to cytochrome P-450 aromatase
           (GI:21170) [Gallus gallus];
          Length = 212

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = -1

Query: 110 NKTPSSF-KF*MCSIVENK*INS 45
           N+ PSSF +F   S++ENK INS
Sbjct: 63  NREPSSFFRFAAFSMIENKTINS 85


>At2g05870.1 68415.m00636 cytochrome P-450 aromatase-related similar
           to minor outer capsid protein VP4 (GI:13446784) [Human
           rotavirus C]; similar to cytochrome P-450 aromatase
           (GI:21170) [Gallus gallus];
          Length = 161

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = -1

Query: 110 NKTPSS-FKF*MCSIVENK*INS 45
           N+ PSS F+F   S++ENK INS
Sbjct: 6   NREPSSLFRFAAFSMIENKTINS 28


>At1g61740.1 68414.m06963 expressed protein contains Pfam profile:
           PF01925 domain of unknown function DUF81; identical to
           cDNA hypothetical protein, partial GI:4079631
          Length = 458

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 20  PSWSRNAIVSLFIYFQQWNTFKI*MNLVFYFYL 118
           P+W    I SLF  F  W+T K   N ++Y+ L
Sbjct: 159 PNW---LITSLFAVFLAWSTLKTFGNGLYYWRL 188


>At2g28180.1 68415.m03422 cation/hydrogen exchanger, putative (CHX8)
           monovalent cation:proton antiporter family 2 (CPA2)
           member, PMID:11500563
          Length = 847

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +2

Query: 26  WSRNAIVSLFIYFQQWNTFKI*MNLVFYFYLFEYYN 133
           W +  I S  +YF Q+   K+ + ++  F+L++ +N
Sbjct: 77  WEKLIIKSAGLYFWQYRLPKLEIVILLVFFLWQGFN 112


>At2g01710.1 68415.m00099 DNAJ heat shock N-terminal
           domain-containing protein simlar to AHM1 [Triticum
           aestivum] GI:6691467; contains Pfam profile PF00226:
           DnaJ domain
          Length = 311

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 152 ILFTVVDYNTQTNKNKTPSSFK 87
           ++FT V+ NTQ +K KT ++ K
Sbjct: 141 LIFTKVNLNTQKSKKKTTTNEK 162


>At1g32610.1 68414.m04024 hydroxyproline-rich glycoprotein family
           protein
          Length = 291

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 100 QVHLNFKCVPLLKINK*THYRVSRPRWMPL 11
           Q+ +N  CVP   + + TH  V+RP   PL
Sbjct: 74  QIQINRPCVPPPVMAQPTHEFVARPPMHPL 103


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,515,732
Number of Sequences: 28952
Number of extensions: 48839
Number of successful extensions: 71
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 12,070,560
effective HSP length: 40
effective length of database: 10,912,480
effective search space used: 218249600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)