Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D20
         (332 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr...    64   5e-12
SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr 1|...    63   9e-12
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   5.3  
SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar...    24   5.3  
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    24   5.3  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    24   7.0  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    23   9.2  
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    23   9.2  

>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 279

 Score = 64.1 bits (149), Expect = 5e-12
 Identities = 24/51 (47%), Positives = 36/51 (70%)
 Frame = +2

Query: 179 YGISQSLFTVEGGHRAIMFNRIGGVQQHVMSEGIHFRIPWFQYPVIYDIRS 331
           + +  SLF V+GGHRAI ++RIGG++  +  EG HF IPW +  + YD+R+
Sbjct: 30  FAVQTSLFNVDGGHRAIKYSRIGGIKNLIYPEGTHFLIPWIETAIDYDVRA 80


>SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 63.3 bits (147), Expect = 9e-12
 Identities = 23/49 (46%), Positives = 36/49 (73%)
 Frame = +2

Query: 185 ISQSLFTVEGGHRAIMFNRIGGVQQHVMSEGIHFRIPWFQYPVIYDIRS 331
           +  S++ V GG RA++F+R+ GVQ+ V+ EG HF IPW Q  ++YD+R+
Sbjct: 22  LQSSIYDVPGGKRAVLFDRLSGVQKQVVQEGTHFLIPWLQKAIVYDVRT 70


>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 527

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 192 NPCLLSKVATGLLCSIE*EEYNNML 266
           N C L K+  G   S++ +EYN+ +
Sbjct: 426 NSCQLQKITRGYWISLQQKEYNSRI 450


>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 413

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +1

Query: 199 VYCRRWPPGYYVQ*NRRSTTTCYERGY 279
           VYC  W  G +V  + R  T C    Y
Sbjct: 357 VYCHDWKNGDFVIFHNRGVTHCITGAY 383


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 327 LIS*MTGYWNHGILK*IP 274
           +IS  TGYW+H I+   P
Sbjct: 306 IISAATGYWDHSIIDAAP 323


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 5/27 (18%)
 Frame = -2

Query: 304 LEPWYPKVNTL-----AHNMLLYSSYS 239
           + PW  K++TL     AH   LY+SY+
Sbjct: 592 VHPWVKKIDTLAAEFPAHTNYLYTSYN 618


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
 Frame = +3

Query: 48  LITINYWQVWHKVS*MIWPENSLKV-------VHLDSTLG*KW--QRSSVLQLTVFHNPC 200
           LIT+  W+ +HK+S + W +   K         HL +     W    ++    TVF++P 
Sbjct: 448 LITLPKWERFHKLSEVDWKKAFYKTFYESRSWFHLVTNFNRIWVIHFTTYWYYTVFNSPT 507

Query: 201 LLSK 212
           ++ K
Sbjct: 508 IIEK 511


>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = -2

Query: 292 YPKVNTLA---HNMLLYSSYSIEHNSPVATFDSKQG 194
           +P +N L    H ML+YS+  + H   V T D   G
Sbjct: 173 FPYLNILVSGGHTMLVYSNSLLNHEIIVTTSDIAVG 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,451,323
Number of Sequences: 5004
Number of extensions: 27749
Number of successful extensions: 49
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)