Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_D20
(332 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0626 - 35169352-35169546,35169736-35169948,35170102-351702... 75 2e-14
04_04_0143 - 23091613-23092467 62 1e-10
02_04_0362 - 22366668-22367516 61 2e-10
07_01_1055 - 9253936-9254130,9254271-9254483,9254588-9254758,925... 41 2e-04
03_06_0437 - 33912326-33912520,33912870-33912998,33913147-339133... 29 0.69
03_06_0427 - 33857008-33857137,33857224-33857258,33857966-338580... 28 1.6
09_06_0258 + 21900685-21901927,21902571-21902710 27 3.7
09_06_0247 + 21844311-21845646,21845991-21846118 27 3.7
09_06_0246 + 21837144-21838194,21838692-21840038,21840576-218406... 27 3.7
08_01_0280 + 2283046-2283532,2285406-2285629,2286630-2287271 27 4.9
07_01_0644 + 4805262-4805712,4806173-4806356,4806511-4806613 27 4.9
05_06_0198 + 26300872-26301519,26302939-26303028,26303118-26303189 27 4.9
01_01_0563 + 4142351-4144510,4145610-4147259,4147942-4148185,414... 27 4.9
11_06_0681 + 26248299-26248838,26249089-26249222,26250245-262506... 26 6.4
09_02_0155 - 5066379-5068385 26 6.4
07_03_0716 + 20905041-20905851,20906644-20906825,20907117-209073... 26 6.4
07_01_0225 - 1650665-1652743 26 6.4
03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,634... 26 8.5
>03_06_0626 -
35169352-35169546,35169736-35169948,35170102-35170272,
35170826-35170942,35171078-35171233
Length = 283
Score = 74.5 bits (175), Expect = 2e-14
Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Frame = +2
Query: 125 PPGLNIG--LKXXXXXXXXXYGISQSLFTVEGGHRAIMFNRIGGVQQHVMSEGIHFRIPW 298
PP G +K Y SL+ VEGGHRAI+FNR+ G++ V EG HF IPW
Sbjct: 5 PPAAAAGRLVKVGLLGGAAIYAAFNSLYNVEGGHRAIVFNRLEGIKDKVYPEGTHFMIPW 64
Query: 299 FQYPVIYDIRS 331
F+ P+IYD+R+
Sbjct: 65 FERPIIYDVRA 75
>04_04_0143 - 23091613-23092467
Length = 284
Score = 62.1 bits (144), Expect = 1e-10
Identities = 24/49 (48%), Positives = 35/49 (71%)
Frame = +2
Query: 185 ISQSLFTVEGGHRAIMFNRIGGVQQHVMSEGIHFRIPWFQYPVIYDIRS 331
+S SL+TV+GG RA++F+R GV + EG HF +PW Q P ++DIR+
Sbjct: 28 LSASLYTVDGGERAVIFDRFRGVLPETVGEGTHFLVPWLQKPFVFDIRT 76
>02_04_0362 - 22366668-22367516
Length = 282
Score = 60.9 bits (141), Expect = 2e-10
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = +2
Query: 188 SQSLFTVEGGHRAIMFNRIGGVQQHVMSEGIHFRIPWFQYPVIYDIRS 331
S +L+TV+GG RA++F+R GV SEG HF +PW Q P I+DIR+
Sbjct: 30 STALYTVDGGQRAVIFDRFRGVLPETSSEGTHFIVPWLQKPFIFDIRT 77
>07_01_1055 -
9253936-9254130,9254271-9254483,9254588-9254758,
9255743-9255859,9257021-9257186,9258885-9258934,
9259095-9259268
Length = 361
Score = 41.1 bits (92), Expect = 2e-04
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +2
Query: 125 PPGLNIGLKXXXXXXXXXYGISQSLFTVEGGHRAIMFNRIGGVQ 256
P G +K Y SL+ VEGGHRAI+FNRI G++
Sbjct: 13 PAGAGTLVKLVVLGGTAVYAAVNSLYNVEGGHRAIVFNRIQGIK 56
Score = 40.7 bits (91), Expect = 3e-04
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +2
Query: 248 GVQQHVMSEGIHFRIPWFQYPVIYDIRS 331
G V EG HF IPWF+ P+IYD+R+
Sbjct: 126 GTIYQVYPEGTHFMIPWFERPIIYDVRA 153
>03_06_0437 -
33912326-33912520,33912870-33912998,33913147-33913317,
33913877-33913993,33914150-33914800
Length = 420
Score = 29.5 bits (63), Expect = 0.69
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 257 QHVMSEGIHFRIPWFQYPVIYDIRS 331
Q V EG F I F+ P+IYD+R+
Sbjct: 216 QEVYPEGTQFMILLFERPIIYDVRA 240
>03_06_0427 -
33857008-33857137,33857224-33857258,33857966-33858046,
33858213-33858338,33858410-33858568,33858797-33858934,
33859084-33859155,33859359-33860273
Length = 551
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 221 RAIMFNRIGGVQQHVMSEGIHFRIPWFQYPVIYDI 325
R I N+ + Q + E HF IPWF+ I+D+
Sbjct: 323 REICNNKAVRLLQLLNPEKSHFSIPWFERLTIFDV 357
>09_06_0258 + 21900685-21901927,21902571-21902710
Length = 460
Score = 27.1 bits (57), Expect = 3.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 267 ITCCCTPPILLNIIARWPPST 205
+T C PP L++ I W P+T
Sbjct: 65 VTICVAPPPLVSYICAWSPTT 85
>09_06_0247 + 21844311-21845646,21845991-21846118
Length = 487
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 267 ITCCCTPPILLNIIARWPPST 205
IT C PP L++ I W P+T
Sbjct: 65 ITFCIAPPPLVSYICAWSPTT 85
>09_06_0246 +
21837144-21838194,21838692-21840038,21840576-21840656,
21842740-21842924
Length = 887
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 267 ITCCCTPPILLNIIARWPPST 205
IT C PP L++ I W P+T
Sbjct: 420 ITFCIAPPPLVSYICAWSPAT 440
>08_01_0280 + 2283046-2283532,2285406-2285629,2286630-2287271
Length = 450
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 204 LSKVATGLLCSIE*EEYNNML*ARVFTLGYHGSSIQSSMIL 326
LS +A LLC Y + L F LGY SS+++++ +
Sbjct: 277 LSNLAVPLLCDDTSYSYTSKLSTLEFRLGYITSSVEATIFI 317
>07_01_0644 + 4805262-4805712,4806173-4806356,4806511-4806613
Length = 245
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 218 HRAIMFNRIGGVQQHVMS 271
HR + +N G+QQHVMS
Sbjct: 141 HRPVRWNFFNGMQQHVMS 158
>05_06_0198 + 26300872-26301519,26302939-26303028,26303118-26303189
Length = 269
Score = 26.6 bits (56), Expect = 4.9
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +2
Query: 95 DMAGKFAKGGPPGLNIGLKXXXXXXXXX-YGISQSLFTVEGGHRAIMFNRIGGVQQH 262
D+ F+ GG P + L +G+S SLF V G I+ GV++H
Sbjct: 154 DLRMLFSSGGMPSSHTALCTALTASVALCHGVSDSLFPVCLGFTLIVMYDATGVRRH 210
>01_01_0563 +
4142351-4144510,4145610-4147259,4147942-4148185,
4148280-4148830
Length = 1534
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 21 YKYFHKLCNLITINYWQVWHKVS*M-IWPENSLKVVHLDSTLG*K 152
YK + C++ +N + H+ + + +WP L+++ +D TLG K
Sbjct: 561 YKIMSEACHVWLLNALVLLHRGAMVSLWPAVHLEILLVDDTLGLK 605
>11_06_0681 +
26248299-26248838,26249089-26249222,26250245-26250630,
26250781-26251283,26251335-26251538
Length = 588
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +2
Query: 203 TVEGGHRAIMFNRIGGVQQHVMSEGIHFRIPWFQYPVIYD 322
T +GG AI+ N +G + EG++ + W P++ +
Sbjct: 506 TGKGGIGAILRNSLGEAELLACKEGLNMALQWTFLPIMLE 545
>09_02_0155 - 5066379-5068385
Length = 668
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 313 DWILEPWYPKVNTLAHNMLLYSSYSIE 233
DW+L+ W+ T A +M L Y+IE
Sbjct: 561 DWVLKHWHDGSLTEAVDMRLQGDYNIE 587
>07_03_0716 +
20905041-20905851,20906644-20906825,20907117-20907330,
20907416-20907653,20907905-20908058,20908190-20908461,
20908703-20908808
Length = 658
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 21 YKYFHKLCNLITINYWQVW 77
Y Y KLCNLI+ WQ+W
Sbjct: 521 YPYDGKLCNLISY-AWQLW 538
>07_01_0225 - 1650665-1652743
Length = 692
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -2
Query: 328 PNIIDDWILEPWYPKVNTLAHNMLLYSSYSIE 233
P ++ DW+LE W + T + L Y+I+
Sbjct: 579 PGVLVDWVLEHWQKGLLTNTVDARLQGDYNID 610
>03_02_0199 -
6347980-6348225,6348300-6348341,6348824-6348978,
6349369-6349475,6349608-6349733,6349809-6349890,
6350057-6350130,6351184-6352631,6353391-6353540,
6353664-6353906,6354009-6354266,6355554-6356015
Length = 1130
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -2
Query: 268 HNMLLYSSYSIE-HNSPVATFDSKQGL*NTVSCSTD 164
+N L +S+E HNS + D+ NTVSC+T+
Sbjct: 777 NNCTLCREHSLENHNSSILHKDNLCASANTVSCNTE 812
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,517,077
Number of Sequences: 37544
Number of extensions: 190835
Number of successful extensions: 397
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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