Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D20
         (332 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13169| Best HMM Match : Band_7 (HMM E-Value=1.4013e-45)             67   3e-12
SB_58523| Best HMM Match : Tctex-1 (HMM E-Value=1.8e-11)               29   0.71 
SB_47918| Best HMM Match : RnaseH (HMM E-Value=0.03)                   28   1.6  
SB_21171| Best HMM Match : Dam (HMM E-Value=1.3)                       28   2.2  
SB_17434| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.2  
SB_58248| Best HMM Match : Pox_A32 (HMM E-Value=0.97)                  27   2.9  
SB_22705| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.6  
SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)          26   8.8  

>SB_13169| Best HMM Match : Band_7 (HMM E-Value=1.4013e-45)
          Length = 242

 Score = 67.3 bits (157), Expect = 3e-12
 Identities = 26/49 (53%), Positives = 38/49 (77%)
 Frame = +2

Query: 185 ISQSLFTVEGGHRAIMFNRIGGVQQHVMSEGIHFRIPWFQYPVIYDIRS 331
           ++ +LF V+GGHRA++F+R  GV+  V+ EG HF IPW Q P+I+DIR+
Sbjct: 23  VNSALFNVDGGHRAVIFDRFQGVKPDVVGEGTHFLIPWVQRPIIFDIRT 71


>SB_58523| Best HMM Match : Tctex-1 (HMM E-Value=1.8e-11)
          Length = 541

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 322 IIDDWILEPWYPKVNTLAHN 263
           ++ DW  + WYPKV T+  N
Sbjct: 274 VVPDWPTQAWYPKVKTMCLN 293


>SB_47918| Best HMM Match : RnaseH (HMM E-Value=0.03)
          Length = 327

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 322 IIDDWILEPWYPKVNTL 272
           ++ DW  + WYPKV T+
Sbjct: 269 VVPDWPTQAWYPKVKTM 285


>SB_21171| Best HMM Match : Dam (HMM E-Value=1.3)
          Length = 310

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 322 IIDDWILEPWYPKVNTL 272
           I+ +W  +PWYPK++ L
Sbjct: 125 IVPNWSTQPWYPKLSRL 141


>SB_17434| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 213

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 322 IIDDWILEPWYPKVNTL 272
           I+ +W  +PWYPK++ L
Sbjct: 120 IVPNWSTQPWYPKLSRL 136


>SB_58248| Best HMM Match : Pox_A32 (HMM E-Value=0.97)
          Length = 540

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 10/28 (35%), Positives = 22/28 (78%)
 Frame = +2

Query: 209 EGGHRAIMFNRIGGVQQHVMSEGIHFRI 292
           EG ++ I+F+  GG++++++S G H+R+
Sbjct: 292 EGPNKLIIFDDWGGLKRNLVSPGKHWRL 319


>SB_22705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = +3

Query: 9   VV*GYKYFHKLCNLITINYWQVWHKVS*MIWPENSLKVVHLDSTLG*KWQRSSVLQLTVF 188
           VV  Y +   +  + T N   +W ++   +     ++ VHL S L  +  R+  L   V 
Sbjct: 78  VVHRYNFVDPITGVHTQNIESLWSRLKSTVKERRGIRRVHLQSYLDEQTWRAGALLTGVP 137

Query: 189 HNPCLLSKV 215
             P L+S V
Sbjct: 138 SIPSLVSSV 146


>SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)
          Length = 421

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -3

Query: 132 PGGPPLANFPA 100
           PGGPP AN+PA
Sbjct: 261 PGGPPPANYPA 271


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,918,503
Number of Sequences: 59808
Number of extensions: 215794
Number of successful extensions: 446
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)