Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D20
         (332 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28940-7|AAA68353.2|  294|Caenorhabditis elegans Mitochondrial p...    98   1e-21
AC087079-9|AAK27865.1|  275|Caenorhabditis elegans Mitochondrial...    66   6e-12

>U28940-7|AAA68353.2|  294|Caenorhabditis elegans Mitochondrial
           prohibitin complexprotein 2 protein.
          Length = 294

 Score = 98.3 bits (234), Expect = 1e-21
 Identities = 44/83 (53%), Positives = 54/83 (65%)
 Frame = +2

Query: 83  SKLNDMAGKFAKGGPPGLNIGLKXXXXXXXXXYGISQSLFTVEGGHRAIMFNRIGGVQQH 262
           +K    A K A     G  +GL          YG++QS+FTVE GHRAIMFNRIGG+   
Sbjct: 2   AKQGQEAMKKAIQNARGAGVGLGLVAAAGAAVYGVAQSMFTVEAGHRAIMFNRIGGLSTD 61

Query: 263 VMSEGIHFRIPWFQYPVIYDIRS 331
           +  EG+HFRIPWFQYP+IYDIR+
Sbjct: 62  LYKEGLHFRIPWFQYPIIYDIRA 84


>AC087079-9|AAK27865.1|  275|Caenorhabditis elegans Mitochondrial
           prohibitin complexprotein 1 protein.
          Length = 275

 Score = 66.1 bits (154), Expect = 6e-12
 Identities = 28/51 (54%), Positives = 39/51 (76%), Gaps = 1/51 (1%)
 Frame = +2

Query: 182 GISQS-LFTVEGGHRAIMFNRIGGVQQHVMSEGIHFRIPWFQYPVIYDIRS 331
           GI+Q+ L+ V+GG RA++F+R  GV+  V+ EG HF IPW Q P+I+DIRS
Sbjct: 24  GIAQTALYNVDGGQRAVIFDRFSGVKNEVVGEGTHFLIPWVQKPIIFDIRS 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,065,572
Number of Sequences: 27780
Number of extensions: 160179
Number of successful extensions: 308
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)