Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D19
         (334 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associat...    58   4e-10
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    28   0.33 
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    27   0.99 
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ...    24   5.3  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   7.0  
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    23   9.2  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    23   9.2  

>SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associated
           complex beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 58.0 bits (134), Expect = 4e-10
 Identities = 32/68 (47%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
 Frame = +1

Query: 136 MNTEKLKKLQSQVRIGGKGTPRRKKKVVHVTA--ATDDXXXXXXXXXXXVNTIPGIEEVN 309
           M+  KL KLQ+  RIGGKGTPRRK K    +A  A DD           +  + GI+EVN
Sbjct: 1   MDPSKLAKLQAGARIGGKGTPRRKVKKPSKSAMSAADDKKVQGALKKLNMQNLAGIQEVN 60

Query: 310 MIKDDGTV 333
           M K+DG V
Sbjct: 61  MFKEDGGV 68


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 28.3 bits (60), Expect = 0.33
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 201 AQEEGCTRYSGNRR*EIAIVSQKIVSEHHSWH*RGQYD 314
           A EE  T   GN    +   S+K  S +HS H +G YD
Sbjct: 391 AWEEDLTPQYGNLTTRLLFASKKYWSRNHSSHSQGNYD 428


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 26.6 bits (56), Expect = 0.99
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +2

Query: 56  ACVNN*IISLKSAARVCRE 112
           A VN  I SLKSAA+VC E
Sbjct: 637 ATVNQRITSLKSAAKVCSE 655


>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 448

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 269 FLRDDCNFLSSVAAVTCTTF 210
           FLRD  NF++S+A ++   F
Sbjct: 412 FLRDQFNFITSIACLSLLCF 431


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 176 RTCDCSFFSFSVFIMLF*CVKILDRHAQHFSVILF 72
           R    +FF  S+F  ++ C + L+  +  FS+I F
Sbjct: 62  RNISNTFFKKSIFFFVYYCKQALEFISTVFSIIKF 96


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 145 EKLKKLQSQVRIGGKGTPRRKKKV 216
           +KLKK   ++++    T +RK+KV
Sbjct: 155 DKLKKKSKRLKLDDSHTQKRKRKV 178


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 220 VQPSSCASVYPYRRCAPATVVSLAFPYSLCYFNVL 116
           V+P +   V  Y++ A   VV   F  +L Y N L
Sbjct: 691 VKPDTSKCVAIYKKAAEMDVVEAMFRIALIYLNGL 725


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,286,019
Number of Sequences: 5004
Number of extensions: 22709
Number of successful extensions: 47
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)