Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_D19
(334 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0411 - 17725661-17725842,17726066-17726104,17726379-177264... 79 1e-15
03_01_0067 - 538929-539143,539306-539344,539579-539635,539727-53... 76 6e-15
03_06_0698 + 35608666-35608709,35608810-35608958,35609493-356095... 64 2e-11
04_04_0677 + 27195264-27195291,27196034-27196271,27196350-271965... 33 0.074
04_03_0588 + 17595299-17596151,17597519-17597665,17598562-175988... 30 0.39
02_01_0301 + 2011707-2015423,2016982-2017182,2017670-2017786,201... 27 2.8
04_04_0687 - 27262742-27262784,27263429-27263584,27263698-272637... 27 3.7
12_01_0667 + 5674322-5674393,5674455-5675159,5676051-5676087,567... 26 6.4
10_01_0292 - 3032595-3032768,3032912-3033008,3033273-3033280 26 6.4
>10_08_0411 -
17725661-17725842,17726066-17726104,17726379-17726435,
17726524-17726672,17727195-17727262,17727796-17727798
Length = 165
Score = 78.6 bits (185), Expect = 1e-15
Identities = 37/64 (57%), Positives = 42/64 (65%)
Frame = +1
Query: 133 IMNTEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNM 312
+MN +KLKK+ VR GGKG+ RRKKK VH T TDD VNTIPGIEEVN+
Sbjct: 1 MMNVDKLKKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRVGVNTIPGIEEVNI 60
Query: 313 IKDD 324
KDD
Sbjct: 61 FKDD 64
>03_01_0067 -
538929-539143,539306-539344,539579-539635,539727-539875,
540298-540365,542009-542093,542185-542246,542612-542700,
543034-543088,544127-544252,544477-544576,544697-545499
Length = 615
Score = 76.2 bits (179), Expect = 6e-15
Identities = 36/63 (57%), Positives = 40/63 (63%)
Frame = +1
Query: 136 MNTEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMI 315
MN +KLKK+ VR GGKG+ RRKKK VH T TDD VN IPGIEEVN+
Sbjct: 441 MNVDKLKKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRVGVNNIPGIEEVNIF 500
Query: 316 KDD 324
KDD
Sbjct: 501 KDD 503
>03_06_0698 +
35608666-35608709,35608810-35608958,35609493-35609531,
35610024-35610163,35611130-35611244,35611281-35611399,
35611413-35611979
Length = 390
Score = 64.5 bits (150), Expect = 2e-11
Identities = 31/51 (60%), Positives = 32/51 (62%)
Frame = +1
Query: 172 VRIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKDD 324
VR GGKGT RRKKK VH T TDD VNTIP IEEVN+ KDD
Sbjct: 5 VRTGGKGTVRRKKKAVHKTGTTDDKRLQSTLKRVGVNTIPAIEEVNIFKDD 55
>04_04_0677 +
27195264-27195291,27196034-27196271,27196350-27196500,
27196578-27196972,27197270-27197339,27197414-27197696,
27197972-27198297,27198409-27199368
Length = 816
Score = 32.7 bits (71), Expect = 0.074
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -3
Query: 293 PGMVFTDNFLRDDCNFLSSVAAVTCTTFFLRLGVPLPPMRTCDCS 159
PG+VF + RD FL +V V +GVP PP R CS
Sbjct: 670 PGLVFDAGY-RDYLQFLCAVPGVDDAAVLRAVGVPCPPSRARWCS 713
>04_03_0588 +
17595299-17596151,17597519-17597665,17598562-17598837,
17599108-17599805
Length = 657
Score = 30.3 bits (65), Expect = 0.39
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = -1
Query: 202 ASVYPYRRCAPATVVS-LAFPYSLCYFNVLKFSTDTRST 89
+S+Y + RCA A +V +F +S+ Y + KF++DT S+
Sbjct: 182 SSMYTWNRCAYAALVEESSFNFSMIYDSSSKFNSDTVSS 220
>02_01_0301 + 2011707-2015423,2016982-2017182,2017670-2017786,
2018030-2018122
Length = 1375
Score = 27.5 bits (58), Expect = 2.8
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = -3
Query: 290 GMVFTDNFLRDDCNFLSSVAAVTC-TTFFLRLGV--PLPPMRTCDCSFFSFSV 141
G D FL DD FL ++ C T L++G L ++ CDC F V
Sbjct: 1035 GCTIHDGFLHDDLPFLVNLEISKCRTPSVLQVGAWPSLKCLKLCDCLDVCFLV 1087
>04_04_0687 -
27262742-27262784,27263429-27263584,27263698-27263783,
27263881-27264188,27265337-27265455,27265989-27266075,
27266440-27266546
Length = 301
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 264 ERRLQFLIVCCRCNVYNLLLAPRCTL 187
++RL F + CRCN N LAP C L
Sbjct: 4 KKRLFFAVPLCRCNDKN-SLAPSCEL 28
>12_01_0667 +
5674322-5674393,5674455-5675159,5676051-5676087,
5676238-5676335,5676452-5676475
Length = 311
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +1
Query: 145 EKLKKLQS--QVRIGGKGTPRRKKKVVHVTAAT 237
E+LKKL + R GG G P R K +H+ +A+
Sbjct: 266 EELKKLDFFWERRGGGGGNPLRNKMKIHLASAS 298
>10_01_0292 - 3032595-3032768,3032912-3033008,3033273-3033280
Length = 92
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 212 FFLRLGVPLPPMRTCDCSFFSFSVFIML 129
F L L +P P M TC C F S I++
Sbjct: 15 FSLVLAIPAPIMLTCMCPFSSMFYMIIV 42
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,345,907
Number of Sequences: 37544
Number of extensions: 145002
Number of successful extensions: 295
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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