Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D19
         (334 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of ce...    87   2e-18
Z82260-1|CAB05140.1|  332|Caenorhabditis elegans Hypothetical pr...    27   3.3  
U64833-1|AAB04814.1|  857|Caenorhabditis elegans Hypothetical pr...    26   5.7  
Z81065-1|CAB02968.1|  399|Caenorhabditis elegans Hypothetical pr...    26   7.5  

>U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of cell
           death protein 1 protein.
          Length = 161

 Score = 87.4 bits (207), Expect = 2e-18
 Identities = 44/66 (66%), Positives = 48/66 (72%), Gaps = 3/66 (4%)
 Frame = +1

Query: 145 EKLKKLQSQ---VRIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMI 315
           E++KKLQ+Q   VRIGGKGTPRRKKKV+H TAA DD           V  IPGIEEVNMI
Sbjct: 8   ERIKKLQAQQEHVRIGGKGTPRRKKKVIHKTAAADDKKLQSNLKKLSVTNIPGIEEVNMI 67

Query: 316 KDDGTV 333
           KDDGTV
Sbjct: 68  KDDGTV 73


>Z82260-1|CAB05140.1|  332|Caenorhabditis elegans Hypothetical
           protein C32H11.2 protein.
          Length = 332

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 196 VYPYRRCAPATVVSLAFPYSLCYFNVLKFS 107
           VY Y+   P    +L FP   C++ ++KF+
Sbjct: 41  VYVYKTNRPKEEKALLFPIINCFYKIMKFT 70


>U64833-1|AAB04814.1|  857|Caenorhabditis elegans Hypothetical
           protein B0507.6 protein.
          Length = 857

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +1

Query: 133 IMNTEKLK---KLQSQVRIGGKGTPRRKKKVVHVTAATDD 243
           IM TE+++   K + Q+RI GKG   R   + H T   DD
Sbjct: 435 IMGTERVEDVEKSEQQIRINGKG---RLSSIQHDTEEIDD 471


>Z81065-1|CAB02968.1|  399|Caenorhabditis elegans Hypothetical
           protein F16C3.1 protein.
          Length = 399

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = -3

Query: 254 CNFLSSVAAVTCTTFFLRLGVPLPPMRTCDCSFFSFSVFIMLF*CVKILDRHAQHFSVIL 75
           C FL +V      T+   +G+PL       C FFSF      F CV ++   +    ++L
Sbjct: 68  CFFLLTVIISWADTY---MGLPLYSESELGCKFFSFLAHFSDFICVWMISLISCDRMIVL 124

Query: 74  F 72
           +
Sbjct: 125 Y 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,385,464
Number of Sequences: 27780
Number of extensions: 137606
Number of successful extensions: 263
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)