Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D19
         (334 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73230.1 68414.m08475 nascent polypeptide-associated complex ...    75   2e-14
At1g17880.1 68414.m02212 nascent polypeptide-associated complex ...    74   3e-14
At4g28650.1 68417.m04095 leucine-rich repeat transmembrane prote...    28   1.4  
At3g09922.1 68416.m01184 hypothetical protein no ATG start, anno...    27   2.4  
At4g16970.1 68417.m02559 protein kinase family protein contains ...    27   3.1  
At5g54020.1 68418.m06719 expressed protein                             26   5.5  
At2g43110.1 68415.m05352 expressed protein                             26   5.5  
At3g06220.1 68416.m00715 transcriptional factor B3 family protei...    26   7.2  
At4g34200.1 68417.m04854 D-3-phosphoglycerate dehydrogenase, put...    25   9.5  
At3g60000.1 68416.m06699 hypothetical protein  contains Pfam pro...    25   9.5  

>At1g73230.1 68414.m08475 nascent polypeptide-associated complex
           (NAC) domain-containing protein similar to SP|P20290
           Transcription factor BTF3 (RNA polymerase B
           transcription factor 3) {Homo sapiens}; contains Pfam
           profile PF01849: NAC domain
          Length = 165

 Score = 74.5 bits (175), Expect = 2e-14
 Identities = 36/63 (57%), Positives = 40/63 (63%)
 Frame = +1

Query: 136 MNTEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMI 315
           MN EKL K+ + VR GGKGT RRKKK VH T  TDD           VN+IP IEEVN+ 
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRVGVNSIPAIEEVNIF 60

Query: 316 KDD 324
           KDD
Sbjct: 61  KDD 63


>At1g17880.1 68414.m02212 nascent polypeptide-associated complex
           (NAC) domain-containing protein / BTF3b-like
           transcription factor, putative similar to SP|P20290
           Transcription factor BTF3 (RNA polymerase B
           transcription factor 3) {Homo sapiens}; contains Pfam
           profile PF01849: NAC domain; identical to cDNA
           BTF3b-like factor GI:5912423
          Length = 165

 Score = 73.7 bits (173), Expect = 3e-14
 Identities = 36/63 (57%), Positives = 40/63 (63%)
 Frame = +1

Query: 136 MNTEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMI 315
           MN EKL K+ + VR GGKGT RRKKK VH T  TDD           VN+IP IEEVN+ 
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKRLQSTLKRIGVNSIPAIEEVNIF 60

Query: 316 KDD 324
           KDD
Sbjct: 61  KDD 63


>At4g28650.1 68417.m04095 leucine-rich repeat transmembrane protein
           kinase, putative receptor-like protein kinase 5,
           Arabidopsis thaliana, PIR1:S27756
          Length = 1013

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -3

Query: 296 MPGMVFTDNFLRDDCNFLSSVAA--VTCTTFFLRLGVPLPPMRTCDCSFFSFSVFIMLF 126
           + GM  T   + D  + LSS+ +  ++C  F   L   +PP+++ D S  SFS  + LF
Sbjct: 78  LAGMNLTGK-ISDSISQLSSLVSFNISCNGFESLLPKSIPPLKSIDISQNSFSGSLFLF 135


>At3g09922.1 68416.m01184 hypothetical protein no ATG start,
           annotated according to PMID:11123795;  IPS1 mRNA,
           complete sequence GI:8164007
          Length = 80

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 257 DCNFLSSVAAVTCTTFFLRLGVPLPPMRTCDCSFFSFSVFIML 129
           DC F  S +    T+   +  VPL   R C  +F   S+F ML
Sbjct: 8   DCEFCLSPSRNWATSILWQASVPLGISRLCIFNFVILSLFSML 50


>At4g16970.1 68417.m02559 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 868

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +3

Query: 87  KVLRVSVENFNTLK*HNEYGKAKETTVAGAHRR*GYTEAQEEGCTRYSGNRR 242
           KV++   +NFNT++  ++  +AK  T+        YT  +EEG   + G ++
Sbjct: 369 KVIQKRKQNFNTVRLKDQKDQAKHNTIPDFD---SYTIVEEEGSGPHVGAQK 417


>At5g54020.1 68418.m06719 expressed protein 
          Length = 556

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -3

Query: 260 DDCNFLSSVAAVTCTTFFLRLGVPLPPMRTC 168
           D+C     +  V    ++L+LG+P P +  C
Sbjct: 486 DECGLSLHIDCVLGDLYYLKLGIPEPDVEIC 516


>At2g43110.1 68415.m05352 expressed protein 
          Length = 288

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 17/54 (31%), Positives = 33/54 (61%)
 Frame = +1

Query: 70  LNNITEKCCACLSRILTH*NNIMNTEKLKKLQSQVRIGGKGTPRRKKKVVHVTA 231
           L+++T++C A   ++ +   ++   E++  L+ +V IG  GTP R KK+V + A
Sbjct: 172 LHSLTKQCPAV--KLFS--KHLKVEEQVSLLKKRVNIGS-GTPNRIKKLVDIEA 220


>At3g06220.1 68416.m00715 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 175

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +1

Query: 169 QVRIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKDDG 327
           +V I G+G+ +  + VVHV   +D+           V+  P   E N    +G
Sbjct: 95  EVSIYGRGSCKETRAVVHVEEISDESESDNDSLGSLVDVTPMPAEENSDDTEG 147


>At4g34200.1 68417.m04854 D-3-phosphoglycerate dehydrogenase,
           putative / 3-PGDH, putative similar to phosphoglycerate
           dehydrogenase, Arabidopsis thaliana, SP:O04130
          Length = 603

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
 Frame = +1

Query: 133 IMNTEKLKKLQSQVRIGGKGTPRRKKKVVHVTA-ATDDXXXXXXXXXXXVNTIPGIEE-- 303
           ++  EKL +L  Q+  GG G   +  K+ + +A ATDD              I  I +  
Sbjct: 389 VVLAEKLGRLAVQLVAGGSGV--KNAKITYASARATDDLDTRLLRAMITKGIIEPISDVY 446

Query: 304 VNMIKDDGT 330
           VN++  D T
Sbjct: 447 VNLVNADFT 455


>At3g60000.1 68416.m06699 hypothetical protein  contains Pfam
           profile: PF04484 family of unknown function (DUF566)
          Length = 451

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 242 SSVAAVTCTTFFLRLGVPLPPM 177
           SS   V  ++ F RLG+PLPPM
Sbjct: 210 SSSCNVRESSSFSRLGLPLPPM 231


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,690,431
Number of Sequences: 28952
Number of extensions: 116039
Number of successful extensions: 234
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 390583752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)