Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D18
         (274 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    26   1.1  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    26   1.1  
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    25   1.5  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   2.5  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    24   4.4  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    23   5.9  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    23   5.9  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    23   7.8  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    23   7.8  

>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 119 REVPTFLFQSFICDYGIDNLDRGYKG*DQLFTI 217
           R +PT   Q F+ D   + L RG+K  DQ++ I
Sbjct: 155 RALPTDAVQMFVLDEADEMLSRGFK--DQIYDI 185


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 30  LDAIDNVWRL*VYNNRKADWKMAIGGGMSCVKYLLFCFNLLFAIT 164
           L  +D +W L   N+++  WK   G  ++ V  L+F   L++A T
Sbjct: 255 LYTVDELWCL--LNDKRVTWKAYAGHWIARVCLLIFLPILIYAFT 297


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -2

Query: 264 TRLVRT-CRSSHQLDLCMVKS*SQPLYPRSRLSI 166
           ++L+RT  RSS+ L+L  +   S P +P S+LSI
Sbjct: 142 SQLLRTPSRSSNTLELHSLPISSSPSFPSSQLSI 175


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 126 YLLFCFNLLFAITGLIILIVGI 191
           +++FCF   F ITG+   I+ I
Sbjct: 256 FIIFCFLSSFIITGVFFFIMSI 277


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 72  YYKLIIAKRYLLRLNKTRSN 13
           YYKL IAKR LL  + +  N
Sbjct: 426 YYKLDIAKRLLLNKSASAQN 445


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 142 KQKSRYFTQDIPPPIAIFQSAF 77
           KQ SR    DI  PIA FQ++F
Sbjct: 634 KQLSRRNAPDINNPIADFQNSF 655


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 6/16 (37%), Positives = 14/16 (87%)
 Frame = +1

Query: 52  GDYKFIIIEKQIGKWL 99
           G+Y+ +I+ ++IG+W+
Sbjct: 863 GEYRALILAEKIGRWV 878


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 105 GGMSCVKYLLFCFNLLFAITGLIILIVGIK 194
           GG+    +L F + ++FA T  ++LI+ ++
Sbjct: 351 GGIGSSDFLNFLYGIIFAGTAGMMLILSLR 380


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 96  PFSNLLFYYYKLIIAKRYLLRL 31
           PFS L+ YY+ L I+K  +  L
Sbjct: 344 PFSYLILYYFFLDISKLQMTSL 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,136,170
Number of Sequences: 5004
Number of extensions: 20269
Number of successful extensions: 41
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)