Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D18
         (274 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0008 + 12239759-12239923,12240404-12240443,12241278-122414...    26   3.6  
06_03_0587 + 22555414-22557231                                         26   3.6  
07_03_1147 + 24349811-24350161,24351031-24351366,24353260-243533...    26   4.7  
09_01_0028 + 486800-486890,486928-488009,488825-489190,489342-48...    25   6.3  
06_03_0978 - 26494069-26495223                                         25   6.3  
12_01_0043 + 344084-344452,346672-347546,347635-348145                 25   8.3  

>12_02_0008 +
           12239759-12239923,12240404-12240443,12241278-12241435,
           12242400-12242462,12243149-12243268,12243388-12243684,
           12245012-12245335,12246411-12246680
          Length = 478

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 45  NVWRL*VYNNRKADWKMAIGGGMS 116
           N+W   V   R+A W+M +GGG S
Sbjct: 58  NLWGKRVSGVREAMWQMTLGGGES 81


>06_03_0587 + 22555414-22557231
          Length = 605

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = -1

Query: 271 IINTIGPDV*KFSSVRSMYGEE--LISAFIPTIKIINPVIANKRLKQKSRYFTQDIPPPI 98
           I   I P +    S+ ++Y ++  L     PTI  ++ +    +L     Y T +IPP I
Sbjct: 478 ISGLIPPGIGNLKSLNTLYMDDNYLTGNIPPTIGYLHNM---NKLYMDYNYLTGNIPPTI 534

Query: 97  AIFQSAFLLL*TYNR 53
               S   L  ++NR
Sbjct: 535 GYLHSMVFLSFSHNR 549


>07_03_1147 +
           24349811-24350161,24351031-24351366,24353260-24353376,
           24353585-24353647,24354066-24354139,24354216-24354306,
           24354791-24354850,24355270-24355462,24356242-24356522,
           24357435-24357536,24357664-24357774,24358410-24358475,
           24358562-24358660,24358757-24358788,24359171-24359274,
           24359380-24359507,24359625-24359756,24360051-24360359,
           24360887-24361071,24361161-24361263,24361407-24361552,
           24361748-24361827,24361901-24362103
          Length = 1121

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 98  YRWRNVLREVPTFLFQSFICDYGIDNL 178
           Y+ RNV++ +P F  +S   D  +D L
Sbjct: 160 YKTRNVIKNLPKFFAESCASDKEVDGL 186


>09_01_0028 +
           486800-486890,486928-488009,488825-489190,489342-489692
          Length = 629

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 160 IANKRLKQKSRYFTQDIPPPIAIFQ 86
           I+N + K  S Y  +DIP PIA F+
Sbjct: 296 ISNFKSKLGSEYRCRDIPEPIAHFE 320


>06_03_0978 - 26494069-26495223
          Length = 384

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 27  YLDAIDNVWRL*VYNNRKADWKMAIGGGM 113
           Y+ A    WRL  Y+  + +W+M  G G+
Sbjct: 279 YIVAEYGEWRLKRYDEPRDEWRMVAGSGV 307


>12_01_0043 + 344084-344452,346672-347546,347635-348145
          Length = 584

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +3

Query: 123 KYLLFCFNLLFAITGLIILIVGIKAEINSSPYIDLTDENFYTSGPIVL 266
           K++     LL  ITG+ ++I G     NS+ ++ LT      + P+++
Sbjct: 225 KHIFLGLYLLAFITGIYLVIFGSFNTTNSTAWVVLTGAMVLLALPLII 272


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,814,868
Number of Sequences: 37544
Number of extensions: 113508
Number of successful extensions: 235
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 256259052
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)