Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D18
         (274 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.)               45   1e-05
SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0)                41   2e-04
SB_22250| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.005
SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43)      35   0.009
SB_22249| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.016
SB_31427| Best HMM Match : Tetraspannin (HMM E-Value=0)                34   0.016
SB_31428| Best HMM Match : Tetraspannin (HMM E-Value=0)                33   0.027
SB_47590| Best HMM Match : TSP_3 (HMM E-Value=7.6e-09)                 31   0.14 
SB_31429| Best HMM Match : Tetraspannin (HMM E-Value=5.9e-35)          29   0.44 
SB_12805| Best HMM Match : LicD (HMM E-Value=9.7e-06)                  27   1.8  
SB_4308| Best HMM Match : Ldh_1_C (HMM E-Value=2.6e-31)                26   5.4  
SB_58588| Best HMM Match : COBRA1 (HMM E-Value=0.00012)                26   5.4  
SB_51060| Best HMM Match : LRR_1 (HMM E-Value=1.6)                     25   7.2  
SB_6908| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-32)                  25   7.2  
SB_8663| Best HMM Match : DUF250 (HMM E-Value=9.3e-05)                 25   9.5  
SB_7626| Best HMM Match : LRR_1 (HMM E-Value=1.5e-05)                  25   9.5  
SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)            25   9.5  
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  

>SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 23/59 (38%), Positives = 34/59 (57%)
 Frame = +3

Query: 93  MAIGGGMSCVKYLLFCFNLLFAITGLIILIVGIKAEINSSPYIDLTDENFYTSGPIVLI 269
           MA+ G  + VK L+  FN +F + GLI+  VGI A      Y+++   N Y +GP V+I
Sbjct: 1   MALQGSSNIVKILVIIFNFIFFLFGLILFGVGIWASTKLGAYVEIASVN-YATGPRVVI 58


>SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0)
          Length = 252

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
 Frame = +3

Query: 93  MAIGGGMSCVKYLLFCFNLLFAITGLIILIVGI-----KAEINSSPYIDLTDENFYTSGP 257
           M+   G  C+K+++F FNLLF + G  I  +G+     K E+ +  Y  LT    Y + P
Sbjct: 1   MSTDWGFKCIKFMVFFFNLLFLLAGCAIFAIGVWIISSKDEV-AGDYSRLTGTINYKTAP 59

Query: 258 IVLII 272
           I+ I+
Sbjct: 60  ILCIV 64


>SB_22250| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 313

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 117 CVKYLLFCFNLLFAITGLIILIVGIKAEINSSPYI-DLTDENF 242
           CVKY LF  N++F + G +IL VGI   I     I  L D NF
Sbjct: 59  CVKYSLFTINVIFWLAGAVILAVGIFIFIEMKEEITKLADLNF 101


>SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43)
          Length = 211

 Score = 35.1 bits (77), Expect = 0.009
 Identities = 16/56 (28%), Positives = 31/56 (55%)
 Frame = +3

Query: 105 GGMSCVKYLLFCFNLLFAITGLIILIVGIKAEINSSPYIDLTDENFYTSGPIVLII 272
           G    +K L+  FN+LF I G+ ++ VG  AE+    +I+++   + T   +V+ +
Sbjct: 7   GAGRILKILVVFFNVLFFIFGIALIAVGAWAEVQYGEFIEVSSVPYATGSRLVIAV 62


>SB_22249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 34.3 bits (75), Expect = 0.016
 Identities = 11/25 (44%), Positives = 21/25 (84%)
 Frame = +3

Query: 114 SCVKYLLFCFNLLFAITGLIILIVG 188
           +C+KY+LF  N++F + G++IL++G
Sbjct: 37  TCIKYILFFVNVVFWVFGVLILVIG 61


>SB_31427| Best HMM Match : Tetraspannin (HMM E-Value=0)
          Length = 299

 Score = 34.3 bits (75), Expect = 0.016
 Identities = 11/25 (44%), Positives = 21/25 (84%)
 Frame = +3

Query: 114 SCVKYLLFCFNLLFAITGLIILIVG 188
           +C+KY+LF  N++F + G++IL++G
Sbjct: 37  TCIKYILFFVNVVFWVFGVLILVIG 61


>SB_31428| Best HMM Match : Tetraspannin (HMM E-Value=0)
          Length = 280

 Score = 33.5 bits (73), Expect = 0.027
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 117 CVKYLLFCFNLLFAITGLIILIVGI 191
           C KY LF  N++F I GL+++ VG+
Sbjct: 27  CTKYTLFFINVIFFILGLLVMTVGV 51


>SB_47590| Best HMM Match : TSP_3 (HMM E-Value=7.6e-09)
          Length = 669

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 108 GMSCVKYLLFCFNLLFAITGLI 173
           GM C+KYLLF FN +F  + +I
Sbjct: 76  GMQCMKYLLFAFNFVFWCSKII 97


>SB_31429| Best HMM Match : Tetraspannin (HMM E-Value=5.9e-35)
          Length = 286

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 114 SCVKYLLFCFNLLFAITGLIILIVGIKAEINSSPYIDLTD 233
           +C+KY L   N +F + G++++  GI   +      +LTD
Sbjct: 22  TCIKYTLLFVNAIFCVLGILLMFDGIYIFLRLKFENELTD 61


>SB_12805| Best HMM Match : LicD (HMM E-Value=9.7e-06)
          Length = 371

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 229 VRSMYGEELISAFIPTIKIINPVIANK 149
           +R++YG   ISA +PT+ ++ P    K
Sbjct: 251 LRTLYGRTGISAAVPTLMVVEPAPTQK 277


>SB_4308| Best HMM Match : Ldh_1_C (HMM E-Value=2.6e-31)
          Length = 368

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 265 NTIGPDV*KFSSVRSMYGEELISAFIPT 182
           NTI   V +FSS    Y   LI +++PT
Sbjct: 13  NTISRAVRQFSSSSQTYKNHLIKSYVPT 40


>SB_58588| Best HMM Match : COBRA1 (HMM E-Value=0.00012)
          Length = 421

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 168 LIILIVGIKAEINSSPYIDLTDENF 242
           L+  +VG++ E N S + DL  +NF
Sbjct: 237 LVTALVGMQEEFNQSEFCDLIFDNF 261


>SB_51060| Best HMM Match : LRR_1 (HMM E-Value=1.6)
          Length = 146

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 137 LFQSFICDYGIDNLDRGYKG*DQLFTI 217
           L Q+ + DYG+   D GY+   +L T+
Sbjct: 16  LSQTAVSDYGLKGYDLGYRSGTRLLTL 42


>SB_6908| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-32)
          Length = 331

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +3

Query: 69  NNRKADWKMAIGGGMSCVKYLLFCFNLLFAITG--LIILIVG 188
           N+ + D+K    G +     + F  N++F +TG  L++L+VG
Sbjct: 7   NSSELDFKPYSVGIVDVAFAVPFAVNMIFGVTGNVLVVLVVG 48


>SB_8663| Best HMM Match : DUF250 (HMM E-Value=9.3e-05)
          Length = 680

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/20 (50%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +3

Query: 27  YLDAIDN-VWRL*VYNNRKA 83
           ++ A+DN +WRL +YNN  A
Sbjct: 531 FIPAVDNNIWRLQLYNNFNA 550


>SB_7626| Best HMM Match : LRR_1 (HMM E-Value=1.5e-05)
          Length = 260

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 137 LFQSFICDYGIDNLDRGYKG*DQLF 211
           L Q+ + DYG+   D GY+   +LF
Sbjct: 77  LSQTAVSDYGLKGYDLGYRSGTRLF 101


>SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)
          Length = 642

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +3

Query: 165 GLIILIVGIKAEINSSPYIDLTDENFYTSGPIVLII 272
           G+ ++  G  AEI   PYI ++  +F +   +++ +
Sbjct: 378 GIALVGYGAYAEIKFGPYISISSNDFMSGSRLLIAV 413


>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1651

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 223 SMYGEELISAFIPTIKIINPVIANKRLKQKSRYFTQDIPP 104
           +M+G+ L+  F   I +IN   A  RL Q  ++   D+ P
Sbjct: 336 TMFGKYLLEVFSTLINLINTSFAEGRLPQSWKH--ADVAP 373


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,139,866
Number of Sequences: 59808
Number of extensions: 135287
Number of successful extensions: 245
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 16,821,457
effective HSP length: 67
effective length of database: 12,814,321
effective search space used: 294729383
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)