Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_D18
(274 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical pr... 40 2e-04
Z68880-6|CAA93092.1| 308|Caenorhabditis elegans Hypothetical pr... 38 0.001
U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin fam... 29 0.34
U41263-8|AAC24430.1| 455|Caenorhabditis elegans Hypothetical pr... 28 0.79
AF014939-9|AAB63931.2| 246|Caenorhabditis elegans Hypothetical ... 26 3.2
AC024776-18|AAL32241.2| 201|Caenorhabditis elegans Nuclear horm... 26 3.2
AF039050-11|AAC47941.1| 333|Caenorhabditis elegans Seven tm rec... 26 4.2
U61957-2|AAX55703.1| 386|Caenorhabditis elegans Temporarily ass... 25 5.5
AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical ... 25 5.5
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr... 25 7.3
U64845-6|AAC48028.1| 556|Caenorhabditis elegans Hypothetical pr... 25 7.3
U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical pr... 25 7.3
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 25 7.3
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 25 7.3
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 25 7.3
AF003151-16|AAK18916.3| 253|Caenorhabditis elegans Hypothetical... 25 7.3
AF003151-14|AAT68900.1| 399|Caenorhabditis elegans Hypothetical... 25 7.3
>Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical
protein T23D8.2 protein.
Length = 232
Score = 40.3 bits (90), Expect = 2e-04
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +3
Query: 99 IGGGMSCVKYLLFCFNLLFAITGLIILIVGIKAEINSSPYID-LTDENFYTSGPIVLII 272
+ GG++ VKYLLF NL+ + GL ++IVG ++ +D L DE T PI+L++
Sbjct: 2 VEGGVTIVKYLLFLANLVLWVGGLSLIIVGSILQLKFDNVLDILGDERLAT--PILLLV 58
>Z68880-6|CAA93092.1| 308|Caenorhabditis elegans Hypothetical
protein T14G10.6 protein.
Length = 308
Score = 37.5 bits (83), Expect = 0.001
Identities = 13/37 (35%), Positives = 26/37 (70%)
Frame = +3
Query: 117 CVKYLLFCFNLLFAITGLIILIVGIKAEINSSPYIDL 227
CVKY +F FN++F + G +L+ G+ A+I + ++++
Sbjct: 37 CVKYSVFSFNVIFFLLGFGLLLFGVWAQIEKNTFVNM 73
>U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin family
protein 11 protein.
Length = 317
Score = 29.5 bits (63), Expect = 0.34
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +3
Query: 120 VKYLLFCFNLLFAITGLIILIVGI 191
+K+ LF FNL+F + GLI L +G+
Sbjct: 18 LKFSLFIFNLVFLLCGLICLGIGL 41
>U41263-8|AAC24430.1| 455|Caenorhabditis elegans Hypothetical
protein T19D12.10 protein.
Length = 455
Score = 28.3 bits (60), Expect = 0.79
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +3
Query: 81 ADWKMAIGGGMSCVKYLLFCFNLLFAITGLIILIVGIKAEINSSPYIDLTDENFYTSGPI 260
A W A+GG MS + +++ L + L + G N+ PYI T F T+GP+
Sbjct: 251 AVWSSALGGNMSLMTLMIYGPTYLNKVLQLDVKDTGF---ANAIPYIMATAVKF-TAGPL 306
>AF014939-9|AAB63931.2| 246|Caenorhabditis elegans Hypothetical
protein ZC132.9 protein.
Length = 246
Score = 26.2 bits (55), Expect = 3.2
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +3
Query: 120 VKYLLFCFNLLFAITGLIILIVG---IKAEINSSPYIDLTDENFYTSGPI 260
+K +LF LL +TG + +IVG + + P + + E Y+ PI
Sbjct: 185 IKIILFALFLLGTVTGFMPVIVGTIFVSIDCFLVPIVIMLTEIMYSPNPI 234
>AC024776-18|AAL32241.2| 201|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 146 protein.
Length = 201
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 120 VKYLLFCFNLLFAITGLIILIVGIKAEINSSPYIDLTDENFYT 248
+KYL+F F+L + +L + +K+ + S + LTDE T
Sbjct: 1 MKYLVFIFSLFQLASTSGLLDIHLKSAHDQSATLTLTDEQLDT 43
>AF039050-11|AAC47941.1| 333|Caenorhabditis elegans Seven tm
receptor protein 83 protein.
Length = 333
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +3
Query: 111 MSCVKYLLFCFNLLFAITGLIILIVGIKAEINSSPYIDLTDEN 239
++ + YL+FC + I +I L+ GIK + ID+TD++
Sbjct: 202 IAMIIYLIFCAS----IPMIISLVCGIKTWLQIRSAIDITDKS 240
>U61957-2|AAX55703.1| 386|Caenorhabditis elegans Temporarily
assigned gene nameprotein 49, isoform b protein.
Length = 386
Score = 25.4 bits (53), Expect = 5.5
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +3
Query: 48 VWRL*VYNNRKADWKMAIGGGMSCVKYLLFCFNLLFAITGLIILIVGIKAEINSSPYIDL 227
+W L + KMA M + ++ CF+L + +L+ +K EIN YI+L
Sbjct: 240 IWSLSQSRVELDETKMATQKLMRTLIIVVACFSLCWFPLETYLLLNELKPEINGWKYINL 299
>AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical
protein Y38C9A.1 protein.
Length = 1484
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 89 ENGYRWRNVLREVPTFLFQSFICDYG 166
+NGY W NV +E+ LF C YG
Sbjct: 421 DNGYLWNNVNQELSQVLF----CMYG 442
>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical
protein F55H12.3 protein.
Length = 2972
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +1
Query: 58 YKFIIIEKQIGKWLSVEECLA*STY 132
YK+++++ +GK + +EC S Y
Sbjct: 895 YKYVLLDSNVGKCVDRDECEEKSDY 919
>U64845-6|AAC48028.1| 556|Caenorhabditis elegans Hypothetical
protein F45F2.5 protein.
Length = 556
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 135 FCFNLLFAITGLIILIVGIKAEIN 206
FC NL+ AI LI+++V EI+
Sbjct: 34 FCVNLMTAIYTLILIMVAFVIEIS 57
>U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical
protein R03G5.3 protein.
Length = 1311
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Frame = +3
Query: 102 GGGMSCVKYLLFCFNLLFAITGLI------ILIVGIK 194
G G C+ +L+F F+ +++ GL+ I++ GIK
Sbjct: 491 GKGAMCISFLVFIFSNIWSFYGLLETNTDDIIVQGIK 527
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 83 RLENGYRWRNVLREVPTFLFQSFICDYGIDNLD 181
R + ++ +N +FLF + CDYG + +D
Sbjct: 106 RQQGKHQPKNATFSPKSFLFVKYHCDYGYEMVD 138
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 83 RLENGYRWRNVLREVPTFLFQSFICDYGIDNLD 181
R + ++ +N +FLF + CDYG + +D
Sbjct: 169 RQQGKHQPKNATFSPKSFLFVKYHCDYGYEMVD 201
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 83 RLENGYRWRNVLREVPTFLFQSFICDYGIDNLD 181
R + ++ +N +FLF + CDYG + +D
Sbjct: 169 RQQGKHQPKNATFSPKSFLFVKYHCDYGYEMVD 201
>AF003151-16|AAK18916.3| 253|Caenorhabditis elegans Hypothetical
protein D1007.10a protein.
Length = 253
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +3
Query: 126 YLLFCFNLLFAITGLII 176
++ F N+L+AITGL+I
Sbjct: 205 FVTFLLNILYAITGLLI 221
>AF003151-14|AAT68900.1| 399|Caenorhabditis elegans Hypothetical
protein D1007.10b protein.
Length = 399
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +3
Query: 126 YLLFCFNLLFAITGLII 176
++ F N+L+AITGL+I
Sbjct: 351 FVTFLLNILYAITGLLI 367
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,148,690
Number of Sequences: 27780
Number of extensions: 109135
Number of successful extensions: 237
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 227290938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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