Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D18
         (274 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    39   1e-05
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   0.39 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   1.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   3.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   3.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   3.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    20   4.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    19   8.4  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    19   8.4  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 38.7 bits (86), Expect = 1e-05
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +3

Query: 108 GMSCVKYLLFCFNLLFAITGLIILIVGI 191
           GM  +KYLLF FN +FA+ GL IL +G+
Sbjct: 4   GMGMIKYLLFIFNFVFAVCGLGILTLGV 31


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 0.39
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -1

Query: 235 SSVRSMYGEELISAF-IPTIKIIN--PVIANKRLKQKSRYFTQDIP 107
           SSV S+    L+  F IP +   +  P ++NK   Q+  YFT+ IP
Sbjct: 220 SSVTSIQVANLLRLFRIPLVSFFSTSPELSNK---QRFEYFTRTIP 262


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 1.2
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 135 KVGTSRKTFLHR*PFSNLLFYYYKLIIAKRYLLRLNKTRSN 13
           K+GT R   ++  P S L    YKL + +     L+ T S+
Sbjct: 607 KLGTRRAAVIYGIPRSTLRNKVYKLAMERERDASLSSTHSH 647


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 188 THDQDYQSRN 159
           T+DQDY S+N
Sbjct: 370 TNDQDYSSQN 379


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 109 ECLA*STYFFVSIFYLRLRD 168
           EC+A S  F V+ FY  +RD
Sbjct: 462 ECIAISWAFGVNRFYDGIRD 481


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 109 ECLA*STYFFVSIFYLRLRD 168
           EC+A S  F V+ FY  +RD
Sbjct: 515 ECIAISWAFGVNRFYDGIRD 534


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.2 bits (40), Expect = 4.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -2

Query: 270 LSTRLVRTCRSSHQLDLC 217
           L T+ ++ CRS    D C
Sbjct: 338 LDTQFLQVCRSRRHSDSC 355


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 19.4 bits (38), Expect = 8.4
 Identities = 7/27 (25%), Positives = 14/27 (51%)
 Frame = +3

Query: 45  NVWRL*VYNNRKADWKMAIGGGMSCVK 125
           NVW   ++ + +  W  A  GG+  ++
Sbjct: 76  NVWLRFIWTDYQLQWDEADYGGIGVLR 102


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 19.4 bits (38), Expect = 8.4
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = -3

Query: 266 QHDWSGRVE 240
           +HDWS + E
Sbjct: 219 EHDWSSKTE 227


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,289
Number of Sequences: 438
Number of extensions: 1169
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5263398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)