Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D18
         (274 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18040.1 68417.m02685 eukaryotic translation initiation facto...    28   0.77 
At1g03340.1 68414.m00313 expressed protein similar to hypothetic...    27   1.8  
At3g30560.1 68416.m03867 hypothetical protein                          26   4.1  
At4g11800.1 68417.m01879 calcineurin-like phosphoesterase family...    25   7.2  
At5g05310.3 68418.m00572 expressed protein                             25   9.5  
At5g05310.2 68418.m00571 expressed protein                             25   9.5  
At5g05310.1 68418.m00570 expressed protein                             25   9.5  
At1g26170.1 68414.m03194 importin beta-2 subunit family protein ...    25   9.5  

>At4g18040.1 68417.m02685 eukaryotic translation initiation factor
           4E 1 / eIF-4E1 / mRNA cap-binding protein 1 (EIF4E1)
           identical to SP|O23252 Eukaryotic translation initiation
           factor 4E (eIF-4E) (eIF4E) (mRNA cap-binding protein)
           (eIF-4F 25 kDa subunit) (eIF-4F P26 subunit)
           {Arabidopsis thaliana}
          Length = 235

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 21  VFYLDAIDNVWRL*VYNNRKADWKMAIGGGMSCVKYLL 134
           VF    ++  W L  YNN K   K+A G    C K+++
Sbjct: 89  VFTFSTVEEFWSL--YNNMKHPSKLAHGADFYCFKHII 124


>At1g03340.1 68414.m00313 expressed protein similar to hypothetical
           protein GB:AAC79114
          Length = 385

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +2

Query: 83  RLENGYRWRNVLREVPTFLFQSFICDYGIDNL 178
           RL N  RWR + R VP   FQ F  +  ID L
Sbjct: 180 RLRNSTRWRKLSRLVPQ--FQRFDSEVPIDTL 209


>At3g30560.1 68416.m03867 hypothetical protein
          Length = 1473

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 241 KFSSVRSMYGEELISAFIPTIKIINPVIANKRL 143
           K   V+  + +E +SA +  +  INP +AN R+
Sbjct: 242 KTEGVKQKFKKETVSALLKMLDEINPHVANFRI 274


>At4g11800.1 68417.m01879 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 1012

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 70  IIEKQIGKWLSVEECLA*STYFFVSIF 150
           +IEK   KW S+  CL    YFF S F
Sbjct: 42  LIEKFSVKWWSMYACLLGFFYFFSSPF 68


>At5g05310.3 68418.m00572 expressed protein 
          Length = 511

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 159 ITGLIILIVGIKAEINSSPYIDL 227
           +TG I+ + G+   I++SP++ L
Sbjct: 357 LTGRILTVAGVTVAISASPFVAL 379


>At5g05310.2 68418.m00571 expressed protein 
          Length = 496

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 159 ITGLIILIVGIKAEINSSPYIDL 227
           +TG I+ + G+   I++SP++ L
Sbjct: 357 LTGRILTVAGVTVAISASPFVAL 379


>At5g05310.1 68418.m00570 expressed protein 
          Length = 469

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 159 ITGLIILIVGIKAEINSSPYIDL 227
           +TG I+ + G+   I++SP++ L
Sbjct: 357 LTGRILTVAGVTVAISASPFVAL 379


>At1g26170.1 68414.m03194 importin beta-2 subunit family protein
           similar to Importin9 isoform 1 [Mus musculus]
           GI:15186756; contains Pfam profile PF03810:
           Importin-beta N-terminal domain
          Length = 931

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 175 IINPVIANKRLKQKSRYFTQDIPPPIAI 92
           +IN  I    L    R  T D+PPP+ +
Sbjct: 470 VINAGILEHFLNAAVRAITMDVPPPVKV 497


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,698,957
Number of Sequences: 28952
Number of extensions: 98442
Number of successful extensions: 229
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 12,070,560
effective HSP length: 68
effective length of database: 10,101,824
effective search space used: 222240128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)