Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D17
         (416 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83216-3|CAB05674.2|  232|Caenorhabditis elegans Hypothetical pr...    26   9.5  
CU457741-16|CAM36358.1|  312|Caenorhabditis elegans Hypothetical...    26   9.5  

>Z83216-3|CAB05674.2|  232|Caenorhabditis elegans Hypothetical
           protein C08F11.3 protein.
          Length = 232

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 228 VFVLGIVYIFVSTQ*KKIGHYKQTLQFYLLVY 323
           VF+L   YI V T+    G +K+T    LL+Y
Sbjct: 179 VFILRFTYIHVITKRDVFGTFKKTKNVNLLMY 210


>CU457741-16|CAM36358.1|  312|Caenorhabditis elegans Hypothetical
           protein C42C1.15 protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/40 (25%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +2

Query: 260 IYSVKKNWSL*TDTPILFISI-HKLNRVKTLTGTRS*YVD 376
           +Y++ KN+++  D P++F  + H++N+  ++   +  Y+D
Sbjct: 98  VYAIVKNYTVDYDRPLIFNKVHHEVNQFCSVHTLQEVYID 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,737,628
Number of Sequences: 27780
Number of extensions: 140039
Number of successful extensions: 246
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)