Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D17
         (416 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12890.1 68417.m02017 gamma interferon responsive lysosomal t...    28   2.2  
At4g12900.1 68417.m02018 gamma interferon responsive lysosomal t...    27   3.8  

>At4g12890.1 68417.m02017 gamma interferon responsive lysosomal
           thiol reductase family protein / GILT family protein
           similar to SP|P13284 Gamma-interferon inducible
           lysosomal thiol reductase precursor {Homo sapiens};
           contains Pfam profile PF03227: Gamma interferon
           inducible lysosomal thiol reductase (GILT)
          Length = 232

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +3

Query: 9   FLHCLLIFLYGTLFFFCFK*DKVKIFLINSSTCP 110
           FL CL +F Y          +KVKI L   S CP
Sbjct: 17  FLACLFVFTYSNNLVVAENSNKVKINLYYESLCP 50


>At4g12900.1 68417.m02018 gamma interferon responsive lysosomal
           thiol reductase family protein / GILT family protein
           similar to SP|P13284 Gamma-interferon inducible
           lysosomal thiol reductase precursor {Homo sapiens};
           contains Pfam profile PF03227: Gamma interferon
           inducible lysosomal thiol reductase (GILT)
          Length = 231

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 9   FLHCLLIFLYGTLFFFCFK*DKVKIFLINSSTCP 110
           F  CLL+F + +      + DKVK+ L   S CP
Sbjct: 15  FFACLLLFTFSSHNLVAGESDKVKLNLYYESLCP 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,894,990
Number of Sequences: 28952
Number of extensions: 114238
Number of successful extensions: 149
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)