Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_D16
         (489 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1I9T0 Cluster: MiaB-like tRNA modifying enzyme YliG; n...    34   1.5  
UniRef50_Q0DBW2 Cluster: Os06g0521600 protein; n=2; Oryza sativa...    34   2.0  
UniRef50_Q29JB6 Cluster: GA13945-PA; n=1; Drosophila pseudoobscu...    33   2.6  
UniRef50_Q4Q9T4 Cluster: Putative uncharacterized protein; n=4; ...    32   6.0  
UniRef50_Q0LXW3 Cluster: Putative uncharacterized protein; n=1; ...    32   7.9  
UniRef50_A4AGG1 Cluster: Putative uncharacterized protein; n=1; ...    32   7.9  
UniRef50_A3EQ06 Cluster: ATP-dependent DNA helicase; n=1; Leptos...    32   7.9  
UniRef50_Q75DB4 Cluster: ABR112Cp; n=1; Eremothecium gossypii|Re...    32   7.9  

>UniRef50_A1I9T0 Cluster: MiaB-like tRNA modifying enzyme YliG; n=1;
           Candidatus Desulfococcus oleovorans Hxd3|Rep: MiaB-like
           tRNA modifying enzyme YliG - Candidatus Desulfococcus
           oleovorans Hxd3
          Length = 440

 Score = 34.3 bits (75), Expect = 1.5
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
 Frame = +3

Query: 21  INRLSMHPSAAETAFPAAGDRRLTLLPHTLRIPLR----RRPITCLVPQL-GRLLTSPPA 185
           ++R ++ P  A     AA DRR+   PHT+ + +     RR   C++P+L GR  + PPA
Sbjct: 119 LSRCTLPPPDA-VPMQAAADRRICATPHTVYVKIAEGCDRRCTYCIIPRLRGRQRSRPPA 177


>UniRef50_Q0DBW2 Cluster: Os06g0521600 protein; n=2; Oryza sativa
           (japonica cultivar-group)|Rep: Os06g0521600 protein -
           Oryza sativa subsp. japonica (Rice)
          Length = 686

 Score = 33.9 bits (74), Expect = 2.0
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = +3

Query: 30  LSMHPSAAETAFPAA---GDRRLTLLPHTLRIPLRRRPITCLVPQLGRLLTSPPARYSDT 200
           LS HP++  T   A    G    +  PH LR+  RRRP    +P L    ++PP   +  
Sbjct: 65  LSSHPASVLTEGEAGSGIGRGDSSAPPHRLRLRRRRRPPPLPLPYLVLPQSAPPPPSASA 124

Query: 201 DHALSITRKHR 233
             A  I R+HR
Sbjct: 125 ATATPIRRRHR 135


>UniRef50_Q29JB6 Cluster: GA13945-PA; n=1; Drosophila
           pseudoobscura|Rep: GA13945-PA - Drosophila pseudoobscura
           (Fruit fly)
          Length = 294

 Score = 33.5 bits (73), Expect = 2.6
 Identities = 19/42 (45%), Positives = 22/42 (52%)
 Frame = +1

Query: 283 SLSGNGQPEVRATLVTLVPYVAEHSPPKYGEAVKALPVNSCS 408
           S S    P     L T   +  EHSPPK G  V+ALPV+S S
Sbjct: 151 SSSPQSSPHSSIRLNTRFTHRIEHSPPKPGGPVRALPVSSHS 192


>UniRef50_Q4Q9T4 Cluster: Putative uncharacterized protein; n=4;
            Leishmania|Rep: Putative uncharacterized protein -
            Leishmania major
          Length = 2264

 Score = 32.3 bits (70), Expect = 6.0
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 80   QAANFASTHSPDTPTAATHHVSRSPTGEAIDVAA 181
            +  N A  H P +P++A+ + + SPTG   DVAA
Sbjct: 2204 ETGNSALAHDPLSPSSASSNAAASPTGFTADVAA 2237


>UniRef50_Q0LXW3 Cluster: Putative uncharacterized protein; n=1;
           Caulobacter sp. K31|Rep: Putative uncharacterized
           protein - Caulobacter sp. K31
          Length = 415

 Score = 31.9 bits (69), Expect = 7.9
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -2

Query: 236 CAVFSCNAQRMVRVTVSRWRRR--Q*PPQLGNETRDGSPP*GYPESVWKQS*PPVP 75
           CAV++ N +R  R T   WR    +  P L  +T    PP   P SV++    P P
Sbjct: 184 CAVYASNPERWRRCTADGWRGAGLRGQPPLALQTPPAPPPVHEPPSVYEPPVQPEP 239


>UniRef50_A4AGG1 Cluster: Putative uncharacterized protein; n=1;
           marine actinobacterium PHSC20C1|Rep: Putative
           uncharacterized protein - marine actinobacterium
           PHSC20C1
          Length = 546

 Score = 31.9 bits (69), Expect = 7.9
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = -2

Query: 386 AFTASPYFGGECSAT*GTSVTKVARTSGWPLP 291
           A  A PYFGG        SV +V    GWPLP
Sbjct: 30  AAVAVPYFGGPDERNHYNSVVRVVDGGGWPLP 61


>UniRef50_A3EQ06 Cluster: ATP-dependent DNA helicase; n=1;
           Leptospirillum sp. Group II UBA|Rep: ATP-dependent DNA
           helicase - Leptospirillum sp. Group II UBA
          Length = 738

 Score = 31.9 bits (69), Expect = 7.9
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +3

Query: 72  AGDRRLTLLPHTLRIPLRRRPITCLVPQLGRLLTSPP 182
           A  R+ TLL  T  + L+ + +T  +PQL R+L +PP
Sbjct: 96  ARSRKKTLLVSTATVSLQEQLVTKDIPQLARVLDNPP 132


>UniRef50_Q75DB4 Cluster: ABR112Cp; n=1; Eremothecium gossypii|Rep:
           ABR112Cp - Ashbya gossypii (Yeast) (Eremothecium
           gossypii)
          Length = 2141

 Score = 31.9 bits (69), Expect = 7.9
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +1

Query: 253 LARIKIPREFSLSGNGQPEVRATLVTLVPYVAEHSPPKYGEAVKALP 393
           L  I   + FSL    +  +   LVTL+  V E SP  +GE +K +P
Sbjct: 383 LTLISETKHFSLMVENKAIINELLVTLMVQVFEKSPMVFGELIKKIP 429


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 518,329,534
Number of Sequences: 1657284
Number of extensions: 10803774
Number of successful extensions: 25662
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 24868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25658
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28019067077
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)